Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JYB86_RS01725 Genome accession   NZ_CP070997
Coordinates   364474..365334 (-) Length   286 a.a.
NCBI ID   WP_005181774.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359474..370334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS01705 (JYB86_01705) - 361739..362062 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  JYB86_RS01710 (JYB86_01710) rlmB 362168..362920 (+) 753 WP_205779322.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JYB86_RS01715 (JYB86_01715) - 362938..363858 (+) 921 WP_016659657.1 DMT family transporter -
  JYB86_RS01720 (JYB86_01720) coaE 363855..364463 (-) 609 WP_075175011.1 dephospho-CoA kinase -
  JYB86_RS01725 (JYB86_01725) pilD 364474..365334 (-) 861 WP_005181774.1 prepilin peptidase Machinery gene
  JYB86_RS01730 (JYB86_01730) pilC 365334..366560 (-) 1227 WP_127801106.1 type II secretion system F family protein Machinery gene
  JYB86_RS01735 (JYB86_01735) pilB 366591..368297 (-) 1707 WP_005181778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JYB86_RS01740 (JYB86_01740) tpiA 368587..369378 (+) 792 WP_005181780.1 triose-phosphate isomerase -
  JYB86_RS01745 (JYB86_01745) secG 369392..369721 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32048.33 Da        Isoelectric Point: 7.8299

>NTDB_id=542075 JYB86_RS01725 WP_005181774.1 364474..365334(-) (pilD) [Acinetobacter indicus strain LYS68A]
MQEFIHYLIQHPTALYFVVGIFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKISLSQPASTCPKCHSP
IRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTVVAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGDAIMKLYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=542075 JYB86_RS01725 WP_005181774.1 364474..365334(-) (pilD) [Acinetobacter indicus strain LYS68A]
ATGCAAGAATTCATTCATTATCTGATTCAACACCCAACTGCGCTGTATTTCGTAGTTGGGATTTTTAGTTTATGTATTGG
CAGTTTTCTGAATGTGGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGCAATGACTGTCAAATGCTGCTGC
ATCCTGAACAGGCCATCATTGATGAAAGCAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGCCCG
ATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGATCAG
TATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCGTAGTCGCGGTTTTTGGCCCGACCCTGCAAA
TGCTGTTTGGCCTGGTGTTGACCTATGTGTTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGACCGC
TATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTGGGG
ATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGGTGACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCTCTG
GTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGAGAACCAGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATCGCCTTTTTGTGGGGTGATGCAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80

99.65

0.797
  pilD Acinetobacter baumannii D1279779

79.649

99.65

0.794
  pilD Vibrio cholerae strain A1552

55.431

93.357

0.517
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

47.71

91.608

0.437