Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JW886_RS05875 Genome accession   NZ_CP070872
Coordinates   1186684..1187529 (+) Length   281 a.a.
NCBI ID   WP_205872491.1    Uniprot ID   A0AA45KHY8
Organism   Lactococcus taiwanensis strain K_LL004     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1181684..1192529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS05845 (JW886_05845) hisA 1181770..1182489 (+) 720 WP_205272417.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase -
  JW886_RS05850 (JW886_05850) hisF 1182479..1183258 (+) 780 WP_205871550.1 imidazole glycerol phosphate synthase subunit HisF -
  JW886_RS05855 (JW886_05855) hisIE 1183255..1183893 (+) 639 WP_205272416.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE -
  JW886_RS05860 (JW886_05860) - 1183894..1184703 (+) 810 WP_205871551.1 histidinol-phosphatase -
  JW886_RS05865 (JW886_05865) - 1184717..1185676 (-) 960 WP_205272414.1 rhodanese-related sulfurtransferase -
  JW886_RS05870 (JW886_05870) budA 1185878..1186585 (+) 708 WP_420844225.1 acetolactate decarboxylase -
  JW886_RS05875 (JW886_05875) dprA 1186684..1187529 (+) 846 WP_205872491.1 DNA-processing protein DprA Machinery gene
  JW886_RS05880 (JW886_05880) topA 1187750..1189870 (+) 2121 WP_075525829.1 type I DNA topoisomerase -
  JW886_RS05885 (JW886_05885) trmFO 1189952..1191295 (+) 1344 WP_205871552.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  JW886_RS05890 (JW886_05890) xerS 1191322..1192392 (-) 1071 WP_205871553.1 tyrosine recombinase XerS -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31892.58 Da        Isoelectric Point: 9.6008

>NTDB_id=541212 JW886_RS05875 WP_205872491.1 1186684..1187529(+) (dprA) [Lactococcus taiwanensis strain K_LL004]
MTNFDLFRWKTAGMTNLGVNKLLKFYQQNSDKLSLRRMAQVSQVRSVADFIERYKSQDTKVLREKYKQFNSLSILDKDYP
ERLREIYNPPVLLFYQGDLSLLRNPKLAFVGSRTSSSQGLKTVQKLIGELHQTFTIVSGLARGVDTISHLSAIQTHTPTI
AVIGTGLDVFYPSENRKIQTYLAHHQLVISEYAPGEKPLKYHFPERNRIIAGLARGVVVIEAKLRSGSLITCERAMEEGR
DVFSVPGNILDGQSDGCHHLIQQGAKLVYQAQDILEEYIYQ

Nucleotide


Download         Length: 846 bp        

>NTDB_id=541212 JW886_RS05875 WP_205872491.1 1186684..1187529(+) (dprA) [Lactococcus taiwanensis strain K_LL004]
ATTACAAATTTTGATTTATTTCGCTGGAAGACTGCAGGCATGACTAATCTCGGGGTAAATAAGTTGCTGAAATTTTATCA
GCAAAATTCTGACAAGTTAAGCTTACGGCGCATGGCTCAGGTTTCACAGGTAAGATCTGTTGCTGATTTTATCGAACGAT
ACAAATCTCAAGATACAAAAGTTTTAAGAGAGAAATATAAGCAATTCAATTCTCTTTCAATTCTTGACAAAGATTATCCA
GAGCGATTACGAGAAATCTATAACCCACCAGTACTTTTATTCTATCAAGGGGATCTTTCTCTTCTGAGGAACCCTAAGCT
GGCATTCGTTGGCAGCCGAACTTCAAGTTCTCAGGGCTTAAAAACAGTTCAAAAACTTATTGGGGAGCTTCATCAAACTT
TTACAATTGTCAGTGGCCTTGCTCGCGGTGTTGATACCATAAGCCATCTTTCAGCCATTCAAACACATACCCCAACTATC
GCTGTAATAGGAACTGGTTTAGATGTATTCTATCCTAGTGAAAATCGCAAAATACAAACCTATCTCGCACATCATCAACT
TGTAATTTCAGAGTATGCTCCAGGCGAAAAACCACTTAAATATCATTTCCCAGAGCGCAATCGTATTATTGCTGGACTTG
CACGTGGCGTGGTCGTTATTGAAGCTAAGTTGCGCAGTGGCAGTTTAATTACATGTGAAAGAGCAATGGAAGAAGGGAGG
GATGTTTTCTCAGTACCAGGTAACATCTTAGATGGACAATCTGATGGTTGCCACCATCTTATTCAACAAGGAGCAAAATT
AGTCTATCAGGCACAAGATATTTTAGAAGAATATATTTACCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Lactococcus lactis subsp. cremoris KW2

76.071

99.644

0.758
  dprA Streptococcus mutans UA159

60

99.644

0.598
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

56.835

98.932

0.562
  dprA/cilB/dalA Streptococcus pneumoniae D39

56.835

98.932

0.562
  dprA/cilB/dalA Streptococcus pneumoniae R6

56.835

98.932

0.562
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

56.835

98.932

0.562
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

56.835

98.932

0.562
  dprA/cilB/dalA Streptococcus mitis SK321

56.835

98.932

0.562
  dprA Bacillus subtilis subsp. subtilis str. 168

40.909

93.95

0.384
  dprA Legionella pneumophila strain ERS1305867

38.768

98.221

0.381
  dprA Haemophilus influenzae Rd KW20

38.768

98.221

0.381
  dprA Vibrio campbellii strain DS40M4

35.54

100

0.363
  dprA Acinetobacter baumannii D1279779

37.226

97.509

0.363
  dprA Acinetobacter baumannii strain A118

37.226

97.509

0.363