Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   JWR96_RS09145 Genome accession   NZ_CP070856
Coordinates   1844039..1844428 (-) Length   129 a.a.
NCBI ID   WP_043737422.1    Uniprot ID   A0AAX4A8E9
Organism   Lactococcus cremoris strain GR0507     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1836109..1844428 1844039..1844428 within 0


Gene organization within MGE regions


Location: 1836109..1844428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWR96_RS09105 (JWR96_09105) - 1836109..1836891 (-) 783 WP_043737435.1 stage 0 sporulation family protein -
  JWR96_RS09110 (JWR96_09110) - 1836941..1837801 (-) 861 WP_011834463.1 DNA polymerase III subunit delta' -
  JWR96_RS09115 (JWR96_09115) tmk 1837934..1838569 (-) 636 WP_015082045.1 dTMP kinase -
  JWR96_RS09120 (JWR96_09120) yycF 1838747..1839448 (+) 702 WP_003131580.1 response regulator YycF -
  JWR96_RS09125 (JWR96_09125) - 1839513..1840868 (+) 1356 WP_185753036.1 ATP-binding protein -
  JWR96_RS09130 (JWR96_09130) - 1841059..1841871 (+) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  JWR96_RS09135 (JWR96_09135) groL 1841921..1843549 (-) 1629 WP_011675465.1 chaperonin GroEL -
  JWR96_RS09140 (JWR96_09140) groES 1843636..1843920 (-) 285 WP_043737426.1 co-chaperone GroES -
  JWR96_RS09145 (JWR96_09145) ssbB 1844039..1844428 (-) 390 WP_043737422.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14769.85 Da        Isoelectric Point: 7.0198

>NTDB_id=541079 JWR96_RS09145 WP_043737422.1 1844039..1844428(-) (ssbB) [Lactococcus cremoris strain GR0507]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWEKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=541079 JWR96_RS09145 WP_043737422.1 1844039..1844428(-) (ssbB) [Lactococcus cremoris strain GR0507]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
AGAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTAAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

99.225

100

0.992
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

41.593

87.597

0.364