Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A0J47_RS03570 Genome accession   NZ_CP070624
Coordinates   727664..728890 (-) Length   408 a.a.
NCBI ID   WP_068945538.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain RM-71     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 722664..733890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0J47_RS03545 (A0J47_003545) mutT 724488..724895 (-) 408 WP_068945534.1 8-oxo-dGTP diphosphatase MutT -
  A0J47_RS03550 (A0J47_003550) yacG 724976..725185 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  A0J47_RS03555 (A0J47_003555) zapD 725194..725931 (-) 738 WP_068945535.1 cell division protein ZapD -
  A0J47_RS03560 (A0J47_003560) coaE 725999..726601 (-) 603 WP_068945536.1 dephospho-CoA kinase -
  A0J47_RS03565 (A0J47_003565) pilD 726603..727481 (-) 879 WP_068945537.1 prepilin peptidase Machinery gene
  A0J47_RS03570 (A0J47_003570) pilC 727664..728890 (-) 1227 WP_068945538.1 type II secretion system F family protein Machinery gene
  A0J47_RS03575 (A0J47_003575) pilB 728956..730647 (-) 1692 WP_068945539.1 type IV-A pilus assembly ATPase PilB Machinery gene
  A0J47_RS03580 (A0J47_003580) pilA 730654..731034 (-) 381 WP_068945540.1 pilin Machinery gene
  A0J47_RS03585 (A0J47_003585) ampD 731420..731998 (+) 579 WP_068945541.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  A0J47_RS03590 (A0J47_003590) pdhR 732358..733131 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45043.18 Da        Isoelectric Point: 10.0330

>NTDB_id=540936 A0J47_RS03570 WP_068945538.1 727664..728890(-) (pilC) [Photobacterium damselae subsp. damselae strain RM-71]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSNDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=540936 A0J47_RS03570 WP_068945538.1 727664..728890(-) (pilC) [Photobacterium damselae subsp. damselae strain RM-71]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAACGATGTAACAGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGTCATCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGCTCACCACTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATAGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCTGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTACGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACCTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGAAAAACCGCAGGCAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTACAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373