Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DCF50_RS14640 Genome accession   NC_018867
Coordinates   3076271..3076675 (-) Length   134 a.a.
NCBI ID   WP_015044997.1    Uniprot ID   K4L900
Organism   Dehalobacter sp. CF     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3071271..3081675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCF50_RS14615 (DCF50_p2961) lonC 3072178..3074094 (-) 1917 WP_015044992.1 Lon family ATP-dependent protease -
  DCF50_RS14620 (DCF50_p2962) rplI 3074128..3074574 (-) 447 WP_015044993.1 50S ribosomal protein L9 -
  DCF50_RS14625 (DCF50_p2963) - 3074571..3075518 (-) 948 WP_015044994.1 DUF2232 domain-containing protein -
  DCF50_RS14630 (DCF50_p2964) - 3075534..3075857 (-) 324 WP_015044995.1 MazG-like family protein -
  DCF50_RS14635 (DCF50_p2965) rpsR 3076005..3076250 (-) 246 WP_015044996.1 30S ribosomal protein S18 -
  DCF50_RS14640 (DCF50_p2966) ssbA 3076271..3076675 (-) 405 WP_015044997.1 single-stranded DNA-binding protein Machinery gene
  DCF50_RS14645 (DCF50_p2967) rpsF 3076694..3076978 (-) 285 WP_015044998.1 30S ribosomal protein S6 -
  DCF50_RS14650 (DCF50_p2968) ychF 3077115..3078215 (-) 1101 WP_015044999.1 redox-regulated ATPase YchF -
  DCF50_RS14655 (DCF50_p2969) - 3078243..3078446 (-) 204 WP_015045000.1 DUF951 domain-containing protein -
  DCF50_RS14660 (DCF50_p2970) - 3078465..3079130 (-) 666 WP_015045001.1 CvpA family protein -
  DCF50_RS14665 (DCF50_p2971) - 3079822..3080037 (+) 216 WP_015045002.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14898.70 Da        Isoelectric Point: 5.2044

>NTDB_id=54074 DCF50_RS14640 WP_015044997.1 3076271..3076675(-) (ssbA) [Dehalobacter sp. CF]
MLNRVVLIGRLTKDPELRYTPNGVAVASFTLAVDRNYKNSQGEKETDFIPCVVFRQLAELCANYLAKGRLAAVDGRIQVR
SYDGQDGQKRWVTEVLGENVRFLSPKDNNAGASSTQNDFGSFAHEVSLDDDIPF

Nucleotide


Download         Length: 405 bp        

>NTDB_id=54074 DCF50_RS14640 WP_015044997.1 3076271..3076675(-) (ssbA) [Dehalobacter sp. CF]
ATGTTGAATCGTGTAGTACTTATCGGGCGATTAACGAAAGACCCTGAGCTACGCTATACACCAAACGGTGTAGCTGTTGC
ATCTTTTACGCTAGCCGTCGACAGGAATTACAAGAACAGCCAGGGCGAGAAAGAAACGGACTTTATTCCATGCGTTGTTT
TTCGCCAGTTAGCTGAACTCTGCGCGAACTATTTGGCGAAAGGAAGACTGGCTGCAGTAGATGGCAGGATTCAGGTCCGC
TCTTATGACGGTCAGGATGGGCAAAAAAGATGGGTGACAGAGGTCTTGGGAGAGAACGTCAGATTTTTAAGTCCCAAAGA
CAATAATGCCGGAGCATCTTCAACTCAAAATGATTTTGGTTCTTTTGCTCATGAAGTTAGTCTAGATGATGATATACCAT
TTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4L900

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.421

79.851

0.522
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.679

83.582

0.44
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

100

0.418
  ssbB/cilA Streptococcus mitis SK321

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae R6

39.286

100

0.41
  ssbB/cilA Streptococcus mitis NCTC 12261

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae Rx1

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae D39

39.286

100

0.41
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

79.104

0.403
  ssbA Streptococcus mutans UA159

38.519

100

0.388

Multiple sequence alignment