Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6J48_RS07375 Genome accession   NZ_CP070518
Coordinates   1579343..1580569 (+) Length   408 a.a.
NCBI ID   WP_004640845.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574343..1585569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS07340 (I6J48_07340) rimP 1575011..1575535 (-) 525 WP_005037183.1 ribosome maturation factor RimP -
  I6J48_RS07360 (I6J48_07360) secG 1576176..1576505 (-) 330 WP_005037186.1 preprotein translocase subunit SecG -
  I6J48_RS07365 (I6J48_07365) tpiA 1576518..1577312 (-) 795 WP_003654580.1 triose-phosphate isomerase -
  I6J48_RS07370 (I6J48_07370) pilB 1577604..1579316 (+) 1713 WP_205469974.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6J48_RS07375 (I6J48_07375) pilC 1579343..1580569 (+) 1227 WP_004640845.1 type II secretion system F family protein Machinery gene
  I6J48_RS18485 (I6J48_07380) pilD 1580569..1581429 (+) 861 WP_132071018.1 A24 family peptidase Machinery gene
  I6J48_RS07385 (I6J48_07385) coaE 1581431..1582027 (+) 597 WP_003654573.1 dephospho-CoA kinase -
  I6J48_RS07390 (I6J48_07390) - 1582024..1582938 (-) 915 WP_056483131.1 DMT family transporter -
  I6J48_RS07395 (I6J48_07395) rlmB 1582974..1583723 (-) 750 WP_005037200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6J48_RS07400 (I6J48_07400) - 1583826..1584152 (-) 327 WP_003654567.1 pyrimidine/purine nucleoside phosphorylase -
  I6J48_RS07405 (I6J48_07405) - 1584229..1585539 (-) 1311 WP_205469975.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.54 Da        Isoelectric Point: 9.9566

>NTDB_id=540477 I6J48_RS07375 WP_004640845.1 1579343..1580569(+) (pilC) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MTVKKAQLMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFMEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=540477 I6J48_RS07375 WP_004640845.1 1579343..1580569(+) (pilC) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAGGTATCAACGCTTGATATCACGATTTTTACCCGACAACTTGCAACT
ATGATGAAAGCTGGCGTACCACTGGTACAAGGCTTTGAAATTGTGGCGGAAGGTTTAGAAAACCCAGCTATGCGCGAGGT
GGTACTCGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCATCAGCTTTAAGAAAGTATCCTCAGCACTTCGACA
AACTATTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGCTGGATCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTCTTCCAAGACCTGTTTTCTTCCTTTGGCGCAGATTTGCCTGCGTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGTGCAATTATTGCT
GCTTTTATGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATGGTTTAGACAAACTCACGCTTAAGTTGCCTATCTTTGG
TGATCTTGTTTACAAGGCGATTATTGCCCGCTACAGCCGTACTTTAGCAACCACTTTTGCAGCAGGTGTTCCGCTCATTG
ATGCGCTTGAATCAACAGCAGGTGCAACCAATAATGTTATTTATGAACAAGCTGTAATGAAAATTCGTGAAGATGTTGCA
ACAGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACCTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGAGTACTCGTAGGCGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

60.453

97.304

0.588
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363