Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   JRY11_RS01360 Genome accession   NZ_CP070382
Coordinates   252541..252930 (-) Length   129 a.a.
NCBI ID   WP_023188994.1    Uniprot ID   A0AAW7JCA4
Organism   Lactococcus lactis strain KF140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 246444..252930 252541..252930 within 0


Gene organization within MGE regions


Location: 246444..252930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS01330 (JRY11_000268) tmk 246444..247079 (-) 636 WP_012897230.1 dTMP kinase -
  JRY11_RS01335 (JRY11_000269) yycF 247257..247958 (+) 702 WP_003131580.1 response regulator YycF -
  JRY11_RS01340 (JRY11_000270) - 247951..249393 (+) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK -
  JRY11_RS01345 (JRY11_000271) - 249562..250374 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  JRY11_RS01350 (JRY11_000272) groL 250420..252048 (-) 1629 WP_023188993.1 chaperonin GroEL -
  JRY11_RS01355 (JRY11_000273) groES 252137..252421 (-) 285 WP_003131589.1 co-chaperone GroES -
  JRY11_RS01360 (JRY11_000274) ssbB 252541..252930 (-) 390 WP_023188994.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14573.60 Da        Isoelectric Point: 7.0179

>NTDB_id=539577 JRY11_RS01360 WP_023188994.1 252541..252930(-) (ssbB) [Lactococcus lactis strain KF140]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEGEADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=539577 JRY11_RS01360 WP_023188994.1 252541..252930(-) (ssbB) [Lactococcus lactis strain KF140]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAAGGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372