Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JVB21_RS02855 Genome accession   NZ_CP070381
Coordinates   576243..577088 (-) Length   281 a.a.
NCBI ID   WP_075525843.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 571243..582088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS02840 (JVB21_02840) xerS 571380..572450 (+) 1071 WP_205272411.1 tyrosine recombinase XerS -
  JVB21_RS02845 (JVB21_02845) trmFO 572477..573820 (-) 1344 WP_205272412.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  JVB21_RS02850 (JVB21_02850) topA 573902..576022 (-) 2121 WP_205272413.1 type I DNA topoisomerase -
  JVB21_RS02855 (JVB21_02855) dprA 576243..577088 (-) 846 WP_075525843.1 DNA-processing protein DprA Machinery gene
  JVB21_RS02860 (JVB21_02860) budA 577187..577894 (-) 708 WP_240188660.1 acetolactate decarboxylase -
  JVB21_RS02865 (JVB21_02865) - 578096..579055 (+) 960 WP_205272414.1 rhodanese-related sulfurtransferase -
  JVB21_RS02870 (JVB21_02870) - 579069..579878 (-) 810 WP_205272415.1 histidinol-phosphatase -
  JVB21_RS02875 (JVB21_02875) hisIE 579879..580517 (-) 639 WP_205272416.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE -
  JVB21_RS02880 (JVB21_02880) hisF 580514..581293 (-) 780 WP_057720823.1 imidazole glycerol phosphate synthase subunit HisF -
  JVB21_RS02885 (JVB21_02885) hisA 581283..582002 (-) 720 WP_205272417.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31886.62 Da        Isoelectric Point: 9.6008

>NTDB_id=539539 JVB21_RS02855 WP_075525843.1 576243..577088(-) (dprA) [Lactococcus taiwanensis strain K_LL001]
MTNFDLFRWKTAGMTNLGVNKLLKFYQQNPDKLSLRRMAQVAQVRSVADFIERYKSQDTKVLREKYKQFNSLSILDKDYP
ERLREIYNPPVLLFYQGDLSLLRNPKLAFVGSRTSSSQGLKTVQKLIGELHQTFTIVSGLARGVDTISHLSAIQTHTPTI
AVIGTGLDVFYPSENRKIQTYLAHHQLVISEYAPGEKPLKYHFPERNRIIAGLARGVVVIEAKLRSGSLITCERAMEEGR
DVFSVPGNILDGQSDGCHHLIQQGAKLVYQAQDILEEYIYQ

Nucleotide


Download         Length: 846 bp        

>NTDB_id=539539 JVB21_RS02855 WP_075525843.1 576243..577088(-) (dprA) [Lactococcus taiwanensis strain K_LL001]
ATTACAAATTTTGATTTATTTCGCTGGAAGACTGCAGGCATGACTAATCTTGGGGTAAATAAGTTGCTGAAATTTTATCA
GCAAAATCCTGACAAGTTAAGCTTACGGCGCATGGCTCAGGTTGCACAGGTAAGATCTGTTGCTGATTTTATCGAACGAT
ACAAATCTCAAGATACAAAAGTTTTAAGAGAGAAATATAAGCAATTCAATTCTCTTTCAATTCTTGACAAAGATTATCCA
GAGCGATTACGAGAAATCTATAACCCACCAGTACTTTTATTCTATCAAGGGGATCTTTCTCTTCTGAGGAACCCTAAGCT
GGCATTCGTTGGCAGCCGAACTTCAAGTTCTCAGGGCTTAAAAACAGTTCAAAAACTTATTGGGGAGCTTCATCAAACTT
TTACAATTGTCAGTGGCCTTGCTCGCGGTGTTGATACCATAAGCCATCTTTCAGCCATTCAAACACATACCCCAACTATC
GCTGTAATAGGAACTGGTTTAGATGTATTCTATCCTAGTGAAAATCGCAAAATACAAACCTATCTCGCACATCATCAACT
TGTAATTTCAGAGTATGCTCCAGGCGAAAAACCACTTAAATATCATTTCCCAGAGCGCAATCGTATTATTGCTGGACTTG
CACGTGGCGTGGTCGTTATTGAAGCTAAGTTGCGCAGTGGCAGTTTAATTACATGTGAAAGAGCAATGGAAGAAGGGAGG
GATGTTTTCTCAGTACCAGGTAACATCTTAGATGGACAATCTGATGGTTGCCACCATCTTATTCAACAAGGAGCAAAATT
AGTCTATCAGGCACAAGATATTTTAGAAGAATATATTTACCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Lactococcus lactis subsp. cremoris KW2

76.429

99.644

0.762
  dprA Streptococcus mutans UA159

59.643

99.644

0.594
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

56.475

98.932

0.559
  dprA/cilB/dalA Streptococcus pneumoniae D39

56.475

98.932

0.559
  dprA/cilB/dalA Streptococcus pneumoniae R6

56.475

98.932

0.559
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

56.475

98.932

0.559
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

56.475

98.932

0.559
  dprA/cilB/dalA Streptococcus mitis SK321

56.475

98.932

0.559
  dprA Legionella pneumophila strain ERS1305867

38.768

98.221

0.381
  dprA Haemophilus influenzae Rd KW20

38.768

98.221

0.381
  dprA Bacillus subtilis subsp. subtilis str. 168

40.53

93.95

0.381
  dprA Acinetobacter baumannii strain A118

37.455

97.865

0.367
  dprA Acinetobacter baumannii D1279779

37.226

97.509

0.363