Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C380_RS04535 Genome accession   NC_018708
Coordinates   1006420..1007640 (-) Length   406 a.a.
NCBI ID   WP_015012715.1    Uniprot ID   K0I0I5
Organism   Acidovorax sp. KKS102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1001420..1012640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C380_RS04505 (C380_04545) - 1002318..1003190 (+) 873 WP_015012709.1 ATP-binding protein -
  C380_RS04510 (C380_04550) - 1003168..1003638 (+) 471 WP_015012710.1 NUDIX domain-containing protein -
  C380_RS04515 (C380_04555) - 1003756..1003974 (-) 219 WP_015012711.1 DNA gyrase inhibitor YacG -
  C380_RS04520 (C380_04560) zapD 1004077..1004832 (-) 756 WP_015012712.1 cell division protein ZapD -
  C380_RS04525 (C380_04565) coaE 1004918..1005538 (-) 621 WP_015012713.1 dephospho-CoA kinase -
  C380_RS04530 (C380_04570) - 1005548..1006420 (-) 873 WP_015012714.1 A24 family peptidase -
  C380_RS04535 (C380_04575) pilC 1006420..1007640 (-) 1221 WP_015012715.1 type II secretion system F family protein Machinery gene
  C380_RS04540 (C380_04580) pilB 1007661..1009400 (-) 1740 WP_015012716.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C380_RS04550 (C380_04585) - 1009650..1010579 (-) 930 WP_015012717.1 polyprenyl synthetase family protein -
  C380_RS04555 (C380_04590) rplU 1010814..1011125 (+) 312 WP_015012718.1 50S ribosomal protein L21 -
  C380_RS04560 (C380_04595) rpmA 1011141..1011398 (+) 258 WP_005794180.1 50S ribosomal protein L27 -
  C380_RS04565 (C380_04600) cgtA 1011569..1012639 (+) 1071 WP_015012719.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44642.60 Da        Isoelectric Point: 9.4085

>NTDB_id=53892 C380_RS04535 WP_015012715.1 1006420..1007640(-) (pilC) [Acidovorax sp. KKS102]
MATATSAKDIKDFVFEWEGKDRNGKVVRGEIRAVGENQVQATLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQLATMM
KAGVPLLQAFDIVGRGNTNASVTKLLNDIRSDIETGTSLNGAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEK
TEAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEVFVKWWWLIFGVIGGGFFFF
MQAWRRNEKMQMFMDRLLLRIPVFGPLIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYSMATDKIQQEVSTG
TSLTAAMGNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=53892 C380_RS04535 WP_015012715.1 1006420..1007640(-) (pilC) [Acidovorax sp. KKS102]
ATGGCTACCGCAACATCAGCTAAAGATATTAAAGATTTTGTCTTCGAGTGGGAGGGCAAAGACCGCAACGGAAAGGTAGT
GCGAGGAGAAATCCGTGCGGTCGGAGAAAATCAGGTGCAAGCGACCCTGCGCCGCCAAGGGGTTTTCCCCACAAAAATAA
AAAAACGCCGCATGCGCTCAGGCAAAAAGATCAAGCCTAAGGATATTGCGCTGTTCACACGCCAGTTGGCAACTATGATG
AAGGCCGGTGTACCCTTGTTGCAGGCCTTCGATATTGTAGGTCGTGGCAATACCAATGCCAGCGTCACCAAGCTGCTTAA
CGATATTCGCTCCGATATCGAGACAGGGACATCACTCAACGGAGCCTTCAGAAAGTACCCCATGTACTTTGACAGCCTCT
ACTGCAATCTGGTAGAGGCGGGCGAGGCAGCGGGTATTTTGGAAGCACTGCTGGATCGGCTAGCCACGTATATGGAGAAA
ACCGAGGCGATCAAGTCCAAGATCAAGTCGGCTCTCATGTACCCCATTTCTGTGGTGATTGTGGCTTTTGTGGTGGTGAC
AGTCATCATGATTTTTGTCATTCCCGCGTTCAAAGAGGTCTTTACTTCTTTCGGTGCGGACCTACCCGCTCCCACGTTAT
TCGTGATGGCCATCAGCGAGGTATTTGTCAAATGGTGGTGGCTGATTTTCGGTGTCATCGGCGGGGGCTTCTTCTTTTTC
ATGCAGGCATGGCGCCGTAACGAAAAGATGCAGATGTTCATGGACCGGCTTCTGCTGCGTATTCCCGTGTTTGGCCCTTT
AATCGACAAATCTTGCGTCGCGCGTTGGACTCGTACGCTATCCACCATGTTCGCCGCTGGGGTACCTCTGGTTGAGGCAC
TCGATTCGGTGGGGGGAGCTGCAGGCAACTCGGTGTACTCCATGGCCACGGACAAGATTCAACAAGAAGTTTCCACAGGC
ACTAGCCTCACCGCAGCCATGGGAAATGCCAATATCTTTCCGTCCATGGTGCTACAGATGTGCGCCATCGGTGAAGAGTC
CGGCTCCATCGACCACATGCTCGGCAAGGCCGCAGACTTCTATGAAGCCGAAGTGGACGACATGGTCGCAGGCCTCTCCA
GCCTGATGGAACCCATCATCATCGTGTTTCTGGGCACGCTCATCGGCGGTATCGTGGTATCGATGTATCTCCCCATCTTC
AAGCTCGGTCAGGTTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0I0I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.478

99.015

0.539
  pilG Neisseria gonorrhoeae MS11

51.25

98.522

0.505
  pilG Neisseria meningitidis 44/76-A

51

98.522

0.502
  pilC Legionella pneumophila strain ERS1305867

49.749

98.03

0.488
  pilC Acinetobacter baylyi ADP1

49.497

98.03

0.485
  pilC Acinetobacter baumannii D1279779

47.607

97.783

0.466
  pilC Vibrio cholerae strain A1552

40.196

100

0.404
  pilC Vibrio campbellii strain DS40M4

38.293

100

0.387
  pilC Thermus thermophilus HB27

37.717

99.261

0.374

Multiple sequence alignment