Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JNX00_RS05055 Genome accession   NZ_CP070223
Coordinates   1026619..1027836 (-) Length   405 a.a.
NCBI ID   WP_070399115.1    Uniprot ID   A0A8I1UAM0
Organism   Hydrogenophaga sp. YM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1021619..1032836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNX00_RS05025 (JNX00_05025) - 1022809..1023693 (+) 885 WP_070399120.1 ATP-binding protein -
  JNX00_RS05030 (JNX00_05030) - 1023690..1024139 (+) 450 WP_204744288.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  JNX00_RS05035 (JNX00_05035) - 1024153..1024353 (-) 201 WP_204744289.1 DNA gyrase inhibitor YacG -
  JNX00_RS05040 (JNX00_05040) zapD 1024358..1025113 (-) 756 WP_070399233.1 cell division protein ZapD -
  JNX00_RS05045 (JNX00_05045) coaE 1025157..1025765 (-) 609 WP_204744290.1 dephospho-CoA kinase -
  JNX00_RS05050 (JNX00_05050) pilD 1025762..1026619 (-) 858 WP_204744291.1 A24 family peptidase Machinery gene
  JNX00_RS05055 (JNX00_05055) pilC 1026619..1027836 (-) 1218 WP_070399115.1 type II secretion system F family protein Machinery gene
  JNX00_RS05060 (JNX00_05060) pilB 1027871..1029601 (-) 1731 WP_070399114.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JNX00_RS05070 (JNX00_05070) - 1029902..1030831 (-) 930 WP_083293165.1 polyprenyl synthetase family protein -
  JNX00_RS05075 (JNX00_05075) rplU 1031111..1031422 (+) 312 WP_070399112.1 50S ribosomal protein L21 -
  JNX00_RS05080 (JNX00_05080) rpmA 1031435..1031692 (+) 258 WP_070399111.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44341.98 Da        Isoelectric Point: 9.1369

>NTDB_id=538719 JNX00_RS05055 WP_070399115.1 1026619..1027836(-) (pilC) [Hydrogenophaga sp. YM1]
MATVASKSVKDFVFEWEGKDRNGKAVRGETRAQGENQVTATLRRQGIIPVKIKKRRTSSGKRIKPKDIAIFTRQLATMMK
AGVPLLQSFDIVGRGNPNPNVTRLLNDIRADVETGTSLSAAFRKHPMYFDSLYCNLIEAGEAAGILEDLLDRLATYMEKT
EALKSKIKSALMYPTAVIIVAFVVVAVIMIFVIPSFKEVFTSFGADLPAPTLFVIAMSEFFVQYWWLIFGGLGGGIYFFL
QAWKRNEKVQRFMDRLLLKLPIFGDMIEKSVVARWTRTLATMFGAGVPLVEALDSVGGASGNSVYAIATEKIQQEVSTGT
SLTAAMTNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=538719 JNX00_RS05055 WP_070399115.1 1026619..1027836(-) (pilC) [Hydrogenophaga sp. YM1]
ATGGCCACCGTCGCAAGCAAGAGCGTCAAGGACTTCGTGTTCGAATGGGAGGGCAAGGACCGCAACGGCAAGGCGGTGCG
CGGAGAAACGCGCGCCCAGGGTGAGAACCAGGTGACGGCCACGCTGCGCCGGCAAGGCATCATCCCGGTCAAGATCAAGA
AGCGCCGCACGTCTTCGGGCAAGCGCATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGTTGGCCACCATGATGAAG
GCCGGTGTGCCGCTGCTGCAGTCCTTCGACATCGTGGGCCGCGGCAACCCCAACCCGAACGTCACGCGGCTGCTCAACGA
CATCCGCGCCGACGTGGAAACCGGTACCTCGCTGAGCGCGGCCTTCCGCAAGCACCCGATGTACTTCGACAGCCTCTACT
GCAACCTGATCGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGACCTGCTCGACCGCCTCGCCACGTACATGGAGAAAACC
GAGGCGCTGAAGTCGAAGATCAAGTCGGCCCTGATGTACCCCACGGCCGTGATCATCGTGGCCTTCGTGGTGGTGGCCGT
CATCATGATTTTCGTGATCCCCTCCTTCAAGGAGGTGTTCACCTCGTTCGGCGCCGACCTGCCCGCGCCCACGCTGTTCG
TCATCGCCATGAGCGAGTTCTTCGTCCAGTACTGGTGGCTGATCTTCGGCGGTCTCGGCGGCGGCATCTACTTCTTCCTG
CAAGCCTGGAAGCGCAACGAAAAGGTCCAGCGCTTCATGGACCGCCTGCTGCTCAAGCTGCCCATCTTCGGCGACATGAT
TGAGAAATCGGTGGTGGCGCGCTGGACGCGCACGCTGGCCACTATGTTCGGCGCGGGCGTGCCGCTGGTCGAAGCGCTCG
ACTCCGTGGGCGGTGCGTCGGGCAACTCGGTCTATGCCATCGCCACCGAAAAGATCCAGCAGGAGGTGTCGACCGGCACC
AGCCTCACGGCCGCGATGACCAACGCGAACATTTTTCCCTCGATGGTGCTGCAGATGTGCGCGATCGGCGAGGAATCGGG
CTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTACGAGGCCGAGGTCGATGACATGGTGGCCGGCATCTCCAGCC
TGATGGAGCCGATCATCATCGTGGTGCTCGGCACGGTGATCGGCGGCATCGTCGTCTCGATGTACCTGCCCATCTTCAAG
CTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.568

100

0.546
  pilG Neisseria gonorrhoeae MS11

53

98.765

0.523
  pilG Neisseria meningitidis 44/76-A

52.75

98.765

0.521
  pilC Acinetobacter baylyi ADP1

50.754

98.272

0.499
  pilC Legionella pneumophila strain ERS1305867

49.747

97.778

0.486
  pilC Acinetobacter baumannii D1279779

49.118

98.025

0.481
  pilC Vibrio cholerae strain A1552

41.814

98.025

0.41
  pilC Vibrio campbellii strain DS40M4

40.05

99.259

0.398
  pilC Thermus thermophilus HB27

37.349

100

0.383