Detailed information NTG0538718

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JNX00_RS05050
• Genome accession: NZ_CP070223
• Coordinates: 1025762..1026619 (-)
• Length: 285 a.a.
• NCBI ID: WP_204744291.1
• Uniprot ID: -
• Organism: Hydrogenophaga sp. YM1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1020762..1031619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNX00_RS05020 (JNX00_05020)	argJ	1021565..1022812 (+)	1248	WP_204744287.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
JNX00_RS05025 (JNX00_05025)	-	1022809..1023693 (+)	885	WP_070399120.1	ATP-binding protein	-
JNX00_RS05030 (JNX00_05030)	-	1023690..1024139 (+)	450	WP_204744288.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
JNX00_RS05035 (JNX00_05035)	-	1024153..1024353 (-)	201	WP_204744289.1	DNA gyrase inhibitor YacG	-
JNX00_RS05040 (JNX00_05040)	zapD	1024358..1025113 (-)	756	WP_070399233.1	cell division protein ZapD	-
JNX00_RS05045 (JNX00_05045)	coaE	1025157..1025765 (-)	609	WP_204744290.1	dephospho-CoA kinase	-
JNX00_RS05050 (JNX00_05050)	pilD	1025762..1026619 (-)	858	WP_204744291.1	A24 family peptidase	Machinery gene
JNX00_RS05055 (JNX00_05055)	pilC	1026619..1027836 (-)	1218	WP_070399115.1	type II secretion system F family protein	Machinery gene
JNX00_RS05060 (JNX00_05060)	pilB	1027871..1029601 (-)	1731	WP_070399114.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JNX00_RS05070 (JNX00_05070)	-	1029902..1030831 (-)	930	WP_083293165.1	polyprenyl synthetase family protein	-
JNX00_RS05075 (JNX00_05075)	rplU	1031111..1031422 (+)	312	WP_070399112.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 29986.32 Da
• Isoelectric Point: 6.9214

>NTDB_id=538718 JNX00_RS05050 WP_204744291.1 1025762..1026619(-) (pilD) [Hydrogenophaga sp. YM1]
MAELATGAPAAALLGLLGLLVGSFLNVVIHRLPKMMERQWAAECAELQGTAQEAQAPADRYNLLVPRSACPHCGHPIRWY
ENIPVLSYLALRGRCSQCGAGIGPRYPLVEAATGALFAWAGWHWGLNTAGLAWCGFAAAVVALACIDWDTTLLPDDITLP
LLWAGLVAAALGVTPTHLADAVWGAVGGYLSLWLVYWAFKLLTGKEGMGYGDFKLFAAFGAWFGWQALVPIILMASVIGA
VVGIGIKLVGRLREGGYVPFGPFLALGGLTAMVFGPSAILAAVGL

Nucleotide

• Length: 858 bp

>NTDB_id=538718 JNX00_RS05050 WP_204744291.1 1025762..1026619(-) (pilD) [Hydrogenophaga sp. YM1]
ATGGCGGAGTTGGCCACCGGTGCGCCCGCCGCGGCGCTGTTGGGCTTGCTCGGCCTGCTCGTGGGCAGCTTTCTGAACGT
GGTTATCCACCGCCTGCCCAAGATGATGGAGCGGCAATGGGCCGCCGAATGCGCGGAGTTGCAAGGCACGGCGCAAGAGG
CCCAGGCACCGGCAGACCGCTACAACCTCCTGGTGCCGCGCTCGGCCTGCCCGCATTGCGGCCACCCCATCCGCTGGTAC
GAGAACATCCCCGTGCTGAGCTACCTCGCGCTGCGGGGCCGGTGCAGCCAGTGCGGCGCGGGCATCGGGCCACGCTATCC
CCTGGTGGAAGCGGCCACCGGTGCGCTGTTTGCCTGGGCAGGCTGGCACTGGGGCCTCAACACCGCCGGCCTGGCCTGGT
GCGGGTTCGCCGCGGCCGTGGTCGCGCTGGCCTGCATCGACTGGGACACCACCCTGCTGCCCGACGACATCACGCTGCCC
CTGCTGTGGGCGGGCCTGGTCGCCGCGGCACTCGGCGTTACGCCCACCCACCTGGCCGATGCCGTCTGGGGGGCGGTCGG
CGGCTACCTGTCCTTGTGGCTCGTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGTTCGCGGCCTTCGGCGCCTGGTTCGGCTGGCAAGCGCTGGTGCCCATCATCCTCATGGCCTCGGTGATCGGTGCG
GTCGTCGGCATTGGCATCAAGCTGGTGGGTCGCCTGCGCGAAGGTGGGTATGTGCCCTTCGGCCCCTTCCTCGCGCTGGG
GGGGCTCACCGCCATGGTGTTCGGTCCCTCGGCCATCCTGGCCGCCGTCGGCCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.434	93.684	0.491
pilD	Vibrio campbellii strain DS40M4	50.19	92.281	0.463
pilD	Neisseria gonorrhoeae MS11	47.619	95.789	0.456
pilD	Acinetobacter baumannii D1279779	43.015	95.439	0.411
pilD	Acinetobacter nosocomialis M2	41.912	95.439	0.4