Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q91_RS01925 Genome accession   NC_018697
Coordinates   393918..395138 (-) Length   406 a.a.
NCBI ID   WP_015005194.1    Uniprot ID   S5TZX8
Organism   Cycloclasticus sp. P1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388918..400138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q91_RS01895 (Q91_0376) argJ 389209..390429 (+) 1221 WP_015005188.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  Q91_RS01900 (Q91_0377) - 390457..391392 (+) 936 WP_015005189.1 Nudix family hydrolase -
  Q91_RS01905 (Q91_0378) yacG 391403..391591 (-) 189 WP_015005190.1 DNA gyrase inhibitor YacG -
  Q91_RS01910 (Q91_0379) zapD 391593..392360 (-) 768 WP_238538349.1 cell division protein ZapD -
  Q91_RS01915 (Q91_0380) coaE 392401..393006 (-) 606 WP_015005192.1 dephospho-CoA kinase -
  Q91_RS01920 (Q91_0381) pilD 393013..393888 (-) 876 WP_015005193.1 A24 family peptidase Machinery gene
  Q91_RS01925 (Q91_0382) pilC 393918..395138 (-) 1221 WP_015005194.1 type II secretion system F family protein Machinery gene
  Q91_RS01930 (Q91_0383) pilB 395144..396853 (-) 1710 WP_015005195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q91_RS01935 (Q91_0384) - 397151..397903 (+) 753 WP_015005196.1 glycosyltransferase family 2 protein -
  Q91_RS01940 (Q91_0385) - 397911..399263 (+) 1353 WP_015005197.1 flippase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44340.29 Da        Isoelectric Point: 7.3558

>NTDB_id=53781 Q91_RS01925 WP_015005194.1 393918..395138(-) (pilC) [Cycloclasticus sp. P1]
MASSASKITYIWEGTDNKGNRSKGEINARSDALVKAELRRQGIRPLKVKKKPQALFGSMGQKPIVPKDIAVFSRQLATMM
ASGIPLVQSFDIIGKGHEKPAMQDMLANIKSDIEGGSTLAESLGKYPFQFDELFCNLVEAGEHAGILEDLLVKIAEYKEK
TESLKAKIKKALTYPISVLVVAVVVTAILLIFVVPQFESLFSGFGADLPAFTQMVVELSRFMQEWWWAVFGIIGGVVFVL
MQVKKRSRKFNHLLDRMILKMPIIGDIMNKAAIARYARTLSTMSAAGVPLVEALESVSGATGNIVYSEAVLQMREQVATG
IQLQQAMKNVGLFPHMVVQMVAIGEEAGSVESMLGKVADFYEEEVDNAVDSLSSLIEPLIMAILGILVGGLIVAMYLPIF
MLGSVF

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=53781 Q91_RS01925 WP_015005194.1 393918..395138(-) (pilC) [Cycloclasticus sp. P1]
ATGGCATCTAGTGCATCAAAAATTACCTATATTTGGGAAGGAACCGACAATAAAGGCAACCGCAGCAAAGGGGAAATAAA
TGCCCGAAGTGATGCCCTTGTTAAAGCAGAACTGAGGCGTCAAGGCATTCGCCCCCTTAAGGTTAAGAAAAAGCCTCAAG
CACTTTTTGGTAGCATGGGTCAAAAACCAATTGTTCCTAAAGACATCGCGGTTTTCAGCCGTCAATTAGCAACCATGATG
GCGTCCGGCATTCCATTAGTACAATCTTTTGATATTATTGGCAAAGGACACGAAAAGCCTGCCATGCAAGATATGCTTGC
CAACATTAAATCAGACATTGAGGGCGGGTCAACACTCGCTGAAAGTTTAGGAAAATACCCTTTTCAATTCGATGAGCTAT
TTTGTAATTTAGTAGAAGCTGGCGAACATGCCGGTATTCTCGAAGATTTACTAGTCAAAATTGCTGAATATAAAGAAAAA
ACAGAAAGCTTAAAAGCTAAAATCAAAAAAGCCCTTACCTATCCTATTTCAGTATTAGTAGTGGCCGTTGTTGTTACCGC
AATCTTATTGATTTTTGTTGTGCCTCAGTTTGAAAGCTTATTTAGCGGCTTTGGTGCAGATTTACCTGCGTTTACACAAA
TGGTCGTCGAACTGTCTCGTTTTATGCAAGAGTGGTGGTGGGCTGTCTTTGGCATAATAGGCGGTGTTGTATTTGTTCTA
ATGCAAGTTAAAAAACGTTCACGTAAATTTAACCACCTGCTCGATAGAATGATACTGAAAATGCCAATTATTGGCGACAT
CATGAACAAAGCAGCCATTGCTCGTTATGCTAGAACGTTGTCCACCATGTCTGCTGCTGGCGTACCCTTAGTAGAAGCAC
TAGAGTCTGTTTCAGGGGCAACCGGAAACATTGTTTACTCTGAAGCCGTTTTACAAATGAGAGAACAAGTGGCGACCGGC
ATCCAATTACAACAAGCTATGAAAAATGTAGGCCTTTTCCCTCATATGGTTGTGCAAATGGTCGCTATTGGCGAAGAAGC
AGGCTCGGTCGAAAGCATGCTTGGTAAAGTGGCTGATTTTTATGAAGAAGAGGTCGACAACGCTGTGGATTCCTTATCTA
GCCTTATTGAACCCTTAATTATGGCTATTCTCGGTATCTTAGTGGGTGGTTTAATTGTTGCCATGTACCTGCCTATCTTT
ATGTTAGGGTCTGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5TZX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

60.945

99.015

0.603
  pilC Pseudomonas stutzeri DSM 10701

56.158

100

0.562
  pilC Acinetobacter baumannii D1279779

56.171

97.783

0.549
  pilC Acinetobacter baylyi ADP1

54.054

100

0.542
  pilG Neisseria meningitidis 44/76-A

43.829

97.783

0.429
  pilG Neisseria gonorrhoeae MS11

43.577

97.783

0.426
  pilC Vibrio cholerae strain A1552

41.709

98.03

0.409
  pilC Vibrio campbellii strain DS40M4

40.05

99.015

0.397

Multiple sequence alignment