Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q91_RS01920 Genome accession   NC_018697
Coordinates   393013..393888 (-) Length   291 a.a.
NCBI ID   WP_015005193.1    Uniprot ID   -
Organism   Cycloclasticus sp. P1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388013..398888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q91_RS01895 (Q91_0376) argJ 389209..390429 (+) 1221 WP_015005188.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  Q91_RS01900 (Q91_0377) - 390457..391392 (+) 936 WP_015005189.1 Nudix family hydrolase -
  Q91_RS01905 (Q91_0378) yacG 391403..391591 (-) 189 WP_015005190.1 DNA gyrase inhibitor YacG -
  Q91_RS01910 (Q91_0379) zapD 391593..392360 (-) 768 WP_238538349.1 cell division protein ZapD -
  Q91_RS01915 (Q91_0380) coaE 392401..393006 (-) 606 WP_015005192.1 dephospho-CoA kinase -
  Q91_RS01920 (Q91_0381) pilD 393013..393888 (-) 876 WP_015005193.1 A24 family peptidase Machinery gene
  Q91_RS01925 (Q91_0382) pilC 393918..395138 (-) 1221 WP_015005194.1 type II secretion system F family protein Machinery gene
  Q91_RS01930 (Q91_0383) pilB 395144..396853 (-) 1710 WP_015005195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q91_RS01935 (Q91_0384) - 397151..397903 (+) 753 WP_015005196.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32122.50 Da        Isoelectric Point: 7.0192

>NTDB_id=53780 Q91_RS01920 WP_015005193.1 393013..393888(-) (pilD) [Cycloclasticus sp. P1]
MSIIQALEQSPFLFYLTVCLLGLLVGSFLNVVAYRLPIMLQNAWRQECLAFLEQEDTNNPSPAAFNLSQPRSRCPSCQHP
ISALENIPVLSYLFLQGRCKNCQQAISIRYPAVELITALLSLLIAVQFGVSLQMCVALLFTWALISLTLIDLDTQLLPDS
ITLPLLWFALSISLFEIFITPKTALIGALAGYLSLWSVFWLFKLITGKEGMGYGDFKLLAAIGALLGWKMLPLVIMLSAL
AGAIIGITLIIIHGRDKNIPIPFGPYLSIAAFIALIWGEKINLTYLQFVGL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=53780 Q91_RS01920 WP_015005193.1 393013..393888(-) (pilD) [Cycloclasticus sp. P1]
ATGAGCATTATCCAAGCGCTTGAACAAAGCCCCTTTTTATTCTATTTAACCGTTTGCTTACTAGGGCTTCTGGTTGGTAG
CTTTCTTAATGTTGTCGCCTATCGGCTACCCATCATGTTACAAAATGCTTGGCGCCAAGAATGCCTCGCCTTTCTTGAGC
AAGAAGATACAAATAATCCTTCACCAGCGGCCTTTAATTTATCGCAACCGCGTTCACGCTGCCCTTCTTGCCAACACCCT
ATTAGCGCACTCGAAAACATTCCCGTTTTGAGCTACTTATTTCTACAAGGGCGATGTAAAAACTGCCAACAAGCTATCTC
AATTAGATACCCCGCCGTCGAGTTAATCACTGCTCTTTTGTCGCTTCTCATTGCCGTACAGTTTGGCGTGTCGTTACAAA
TGTGCGTCGCTTTATTATTTACCTGGGCATTAATTTCCCTAACATTGATAGACCTTGACACTCAACTATTGCCCGACTCT
ATCACCCTTCCACTTTTATGGTTTGCCTTATCCATCAGCCTATTTGAAATTTTCATAACACCTAAAACCGCACTCATCGG
CGCACTCGCCGGTTACCTTAGCCTTTGGTCAGTTTTTTGGTTATTTAAATTAATCACCGGTAAAGAAGGGATGGGCTACG
GTGACTTTAAGCTACTTGCCGCTATTGGCGCTTTATTGGGCTGGAAAATGTTACCTCTGGTCATTATGTTATCTGCTTTA
GCTGGTGCAATCATTGGAATAACACTCATCATTATTCACGGACGAGATAAGAACATACCCATACCATTTGGCCCCTATTT
ATCTATTGCCGCGTTTATTGCGTTGATCTGGGGCGAAAAAATTAACCTAACTTACCTCCAGTTTGTCGGCTTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

51.228

97.938

0.502
  pilD Acinetobacter nosocomialis M2

50.877

97.938

0.498
  pilD Vibrio cholerae strain A1552

50

96.907

0.485
  pilD Vibrio campbellii strain DS40M4

48.387

95.876

0.464
  pilD Neisseria gonorrhoeae MS11

48.106

90.722

0.436

Multiple sequence alignment