Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JN756_RS04620 Genome accession   NZ_CP069594
Coordinates   1022250..1023458 (-) Length   402 a.a.
NCBI ID   WP_201021890.1    Uniprot ID   -
Organism   Pseudomonas sp. Y39-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017250..1028458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN756_RS04585 (JN756_04540) - 1018207..1018956 (+) 750 WP_102617159.1 TIM barrel protein -
  JN756_RS04590 (JN756_04545) - 1019128..1019595 (+) 468 WP_057005137.1 hypothetical protein -
  JN756_RS04595 (JN756_04550) - 1019592..1020281 (+) 690 WP_126587498.1 energy-coupling factor ABC transporter permease -
  JN756_RS04600 (JN756_04555) - 1020358..1020573 (+) 216 WP_003171680.1 hypothetical protein -
  JN756_RS04605 (JN756_04560) yacG 1020570..1020770 (-) 201 WP_017845472.1 DNA gyrase inhibitor YacG -
  JN756_RS04610 (JN756_04565) coaE 1020767..1021390 (-) 624 WP_046384731.1 dephospho-CoA kinase -
  JN756_RS04615 (JN756_04570) pilD 1021387..1022253 (-) 867 WP_046384730.1 A24 family peptidase Machinery gene
  JN756_RS04620 (JN756_04575) pilC 1022250..1023458 (-) 1209 WP_201021890.1 type II secretion system F family protein Machinery gene
  JN756_RS04625 (JN756_04580) - 1023660..1024073 (+) 414 WP_017845468.1 pilin -
  JN756_RS04630 (JN756_04585) - 1024109..1025518 (+) 1410 WP_201021891.1 O-antigen ligase family protein -
  JN756_RS04640 (JN756_04595) - 1025767..1026072 (+) 306 WP_017845466.1 DUF6388 family protein -
  JN756_RS04645 (JN756_04600) nadC 1026116..1026964 (-) 849 WP_046384727.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43450.67 Da        Isoelectric Point: 9.8307

>NTDB_id=535850 JN756_RS04620 WP_201021890.1 1022250..1023458(-) (pilC) [Pseudomonas sp. Y39-6]
MTNAATTYAWEGINRQGRRVSGQTVSHDLARVKAQLRQQGICPGRVRKQSAGLPSLAAPIKPADIALFTRQLATLLKAGI
ALLQAFDVISEGFDNRHMYRLVKGLKQEIGAGNTLASALRKQPRYFDDLYCNLVAAGEQAGALETLLERVADHLEKSERL
KARIKKAMTYPIAVIVVASLVSSLLLIHVVPQFQNLFASVDSELPGFTLYVIALSEFLQQAWWMLALSLGAGGLGLRRAY
RVSPGFRHWLDASLLKAPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAAAAGNQLFKQAIEHMRHDVSTGMSLN
RAMATSGLFPGMAIQMTAIGEESGTLEHMLEKVASHYESDVDTLVDQLTSLMEPLIMVVLGGIVGALVIALYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=535850 JN756_RS04620 WP_201021890.1 1022250..1023458(-) (pilC) [Pseudomonas sp. Y39-6]
ATGACCAACGCTGCCACGACATACGCTTGGGAAGGCATCAACCGCCAGGGACGCAGGGTGTCCGGGCAAACCGTCAGCCA
CGACCTCGCGCGGGTCAAGGCACAACTGCGCCAGCAAGGGATTTGCCCTGGCCGCGTGCGCAAACAATCCGCCGGCCTGC
CAAGCCTCGCTGCGCCGATCAAACCGGCGGACATTGCCCTGTTCACCCGCCAACTGGCGACACTGCTAAAGGCCGGCATT
GCGTTGCTGCAAGCCTTCGACGTGATCAGCGAAGGCTTCGACAACCGTCACATGTACAGGCTGGTAAAAGGCCTGAAACA
GGAGATCGGCGCCGGGAATACCCTGGCGTCGGCCCTGCGCAAACAGCCGCGCTACTTCGATGACCTGTACTGCAACCTGG
TGGCGGCGGGTGAGCAGGCCGGCGCCCTGGAAACCCTTCTGGAGCGGGTGGCGGATCACCTGGAAAAGAGCGAACGGCTC
AAGGCCCGGATCAAGAAGGCCATGACCTACCCCATCGCGGTCATCGTGGTCGCCAGCCTTGTCAGCAGTCTCTTGCTGAT
CCATGTGGTGCCGCAATTCCAGAACCTGTTCGCCAGCGTGGACAGCGAGTTGCCCGGTTTTACTCTGTACGTGATTGCCT
TGTCCGAGTTCCTGCAACAAGCCTGGTGGATGCTGGCGCTCAGCCTGGGCGCGGGAGGTCTGGGGTTGCGCCGGGCCTAT
CGCGTATCGCCCGGTTTTCGTCATTGGCTGGATGCCAGTTTGTTGAAAGCGCCCCTGGCAGGCACACTGCTGAAAAAGTC
GGCGGTCGCCCGCTACGCACGCACGCTTTCGACTACGTTCGCGGCCGGAGTGCCTTTGGTGCAGGCCCTGGATTCAGTGG
CCGCCGCTGCCGGCAACCAGCTATTCAAACAGGCTATCGAACATATGCGTCACGATGTATCCACAGGCATGTCGTTGAAT
CGGGCCATGGCTACCAGCGGCCTGTTCCCTGGCATGGCGATCCAGATGACGGCGATTGGTGAAGAATCCGGCACCCTGGA
GCACATGCTGGAAAAAGTCGCGAGCCACTATGAGTCGGACGTCGACACGCTGGTCGACCAACTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTGCTCGGCGGGATTGTCGGCGCTTTGGTAATCGCCCTGTACCTGCCGGTCTTCCAACTCGGTACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.848

98.507

0.59
  pilC Acinetobacter baylyi ADP1

50.873

99.751

0.507
  pilC Acinetobacter baumannii D1279779

49.242

98.507

0.485
  pilC Legionella pneumophila strain ERS1305867

47.98

98.507

0.473
  pilC Vibrio cholerae strain A1552

39.798

98.756

0.393
  pilG Neisseria gonorrhoeae MS11

39.37

94.776

0.373
  pilC Thermus thermophilus HB27

37.688

99.005

0.373
  pilC Vibrio campbellii strain DS40M4

37.913

97.761

0.371
  pilG Neisseria meningitidis 44/76-A

38.583

94.776

0.366