Detailed information NTG0535849

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JN756_RS04615
• Genome accession: NZ_CP069594
• Coordinates: 1021387..1022253 (-)
• Length: 288 a.a.
• NCBI ID: WP_046384730.1
• Uniprot ID: A0A4P7Y2K7
• Organism: Pseudomonas sp. Y39-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1016387..1027253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JN756_RS04580 (JN756_04535)	-	1017137..1018039 (-)	903	WP_126587497.1	GntR family transcriptional regulator	-
JN756_RS04585 (JN756_04540)	-	1018207..1018956 (+)	750	WP_102617159.1	TIM barrel protein	-
JN756_RS04590 (JN756_04545)	-	1019128..1019595 (+)	468	WP_057005137.1	hypothetical protein	-
JN756_RS04595 (JN756_04550)	-	1019592..1020281 (+)	690	WP_126587498.1	energy-coupling factor ABC transporter permease	-
JN756_RS04600 (JN756_04555)	-	1020358..1020573 (+)	216	WP_003171680.1	hypothetical protein	-
JN756_RS04605 (JN756_04560)	yacG	1020570..1020770 (-)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
JN756_RS04610 (JN756_04565)	coaE	1020767..1021390 (-)	624	WP_046384731.1	dephospho-CoA kinase	-
JN756_RS04615 (JN756_04570)	pilD	1021387..1022253 (-)	867	WP_046384730.1	A24 family peptidase	Machinery gene
JN756_RS04620 (JN756_04575)	pilC	1022250..1023458 (-)	1209	WP_201021890.1	type II secretion system F family protein	Machinery gene
JN756_RS04625 (JN756_04580)	-	1023660..1024073 (+)	414	WP_017845468.1	pilin	-
JN756_RS04630 (JN756_04585)	-	1024109..1025518 (+)	1410	WP_201021891.1	O-antigen ligase family protein	-
JN756_RS04640 (JN756_04595)	-	1025767..1026072 (+)	306	WP_017845466.1	DUF6388 family protein	-
JN756_RS04645 (JN756_04600)	nadC	1026116..1026964 (-)	849	WP_046384727.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31857.15 Da
• Isoelectric Point: 7.9058

>NTDB_id=535849 JN756_RS04615 WP_046384730.1 1021387..1022253(-) (pilD) [Pseudomonas sp. Y39-6]
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCAHCREAISARYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=535849 JN756_RS04615 WP_046384730.1 1021387..1022253(-) (pilD) [Pseudomonas sp. Y39-6]
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCACACTGCAATCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTGCTCAGCTACCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTGCGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGACGTGCTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

3D structure

• AlphaFold DB: A0A4P7Y2K7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.396	96.528	0.535
pilD	Vibrio campbellii strain DS40M4	50.538	96.875	0.49
pilD	Acinetobacter baumannii D1279779	49.27	95.139	0.469
pilD	Acinetobacter nosocomialis M2	48.905	95.139	0.465
pilD	Neisseria gonorrhoeae MS11	48.148	93.75	0.451