Detailed information NTG0535538

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: I6J38_RS06525
• Genome accession: NZ_CP069558
• Coordinates: 1318678..1319106 (-)
• Length: 142 a.a.
• NCBI ID: WP_020999411.1
• Uniprot ID: -
• Organism: Streptococcus constellatus strain FDAARGOS_1208
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1313678..1324106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J38_RS06500 (I6J38_06500)	-	1315401..1316600 (-)	1200	WP_006267970.1	acetate kinase	-
I6J38_RS06505 (I6J38_06505)	comYH	1316647..1317600 (-)	954	WP_020998065.1	class I SAM-dependent methyltransferase	Machinery gene
I6J38_RS06510 (I6J38_06510)	comGG	1317685..1318011 (-)	327	WP_020998066.1	competence type IV pilus minor pilin ComGG	-
I6J38_RS06515 (I6J38_06515)	comGF/cglF	1317992..1318429 (-)	438	WP_003035329.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6J38_RS06520 (I6J38_06520)	comGE/cglE	1318413..1318706 (-)	294	WP_003035318.1	competence type IV pilus minor pilin ComGE	Machinery gene
I6J38_RS06525 (I6J38_06525)	comYD	1318678..1319106 (-)	429	WP_020999411.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6J38_RS06530 (I6J38_06530)	comYC	1319066..1319383 (-)	318	WP_020998068.1	competence type IV pilus major pilin ComGC	Machinery gene
I6J38_RS06535 (I6J38_06535)	comYB	1319380..1320402 (-)	1023	WP_037592679.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6J38_RS06540 (I6J38_06540)	comYA	1320344..1321285 (-)	942	WP_006268058.1	competence type IV pilus ATPase ComGA	Machinery gene
I6J38_RS06545 (I6J38_06545)	-	1321355..1321720 (-)	366	WP_022525692.1	DUF1033 family protein	-
I6J38_RS06550 (I6J38_06550)	glnA	1321908..1323254 (-)	1347	WP_020998070.1	type I glutamate--ammonia ligase	-
I6J38_RS06555 (I6J38_06555)	-	1323293..1323652 (-)	360	WP_003073972.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 16224.69 Da
• Isoelectric Point: 10.1968

>NTDB_id=535538 I6J38_RS06525 WP_020999411.1 1318678..1319106(-) (comYD) [Streptococcus constellatus strain FDAARGOS_1208]
MQNIQKKLAQLQIKGFTLLESLLTLFMTSLLLLAVSGSVRSSFEQVEQQIFFLEFEHFYRESQKLSSAAQSQLDMNFSRE
RISNGYSYLAVPRSIQAPEDLTLHFDKAGGNSSLGKVIFQTKKQTITYQLYLGNGKFKKTIR

Nucleotide

• Length: 429 bp

>NTDB_id=535538 I6J38_RS06525 WP_020999411.1 1318678..1319106(-) (comYD) [Streptococcus constellatus strain FDAARGOS_1208]
ATGCAAAACATACAAAAGAAGCTCGCACAGTTGCAGATTAAAGGTTTTACGCTTTTGGAAAGTTTGCTGACCTTATTTAT
GACGAGTCTCTTATTGCTTGCTGTGTCAGGTTCAGTACGTTCATCGTTTGAGCAAGTAGAACAGCAAATTTTCTTTCTAG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGTGCAGCTCAAAGTCAGTTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAGCTATTTGGCAGTTCCTCGCTCGATTCAGGCTCCGGAAGACCTGACACTTCATTTTGACAA
GGCAGGCGGCAATTCATCGCTCGGAAAGGTTATCTTTCAGACAAAAAAGCAAACAATTACGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAATACGTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	61.94	94.366	0.585
comGD/cglD	Streptococcus mitis NCTC 12261	58.915	90.845	0.535
comGD/cglD	Streptococcus mitis SK321	58.268	89.437	0.521
comGD/cglD	Streptococcus pneumoniae Rx1	58.268	89.437	0.521
comGD/cglD	Streptococcus pneumoniae D39	58.268	89.437	0.521
comGD/cglD	Streptococcus pneumoniae R6	58.268	89.437	0.521
comGD/cglD	Streptococcus pneumoniae TIGR4	57.48	89.437	0.514
comYD	Streptococcus mutans UA140	50	91.549	0.458
comYD	Streptococcus mutans UA159	50	91.549	0.458