Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6J44_RS04640 Genome accession   NZ_CP069537
Coordinates   950326..951552 (-) Length   408 a.a.
NCBI ID   WP_016802496.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 945326..956552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS04610 (I6J44_04610) - 945356..946666 (+) 1311 WP_002114682.1 tetratricopeptide repeat protein -
  I6J44_RS04615 (I6J44_04615) - 946743..947069 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  I6J44_RS04620 (I6J44_04620) rlmB 947172..947921 (+) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6J44_RS04625 (I6J44_04625) - 947957..948871 (+) 915 WP_002115017.1 DMT family transporter -
  I6J44_RS04630 (I6J44_04630) coaE 948868..949464 (-) 597 WP_002115011.1 dephospho-CoA kinase -
  I6J44_RS04635 (I6J44_04635) pilD 949466..950326 (-) 861 WP_002114758.1 prepilin peptidase Machinery gene
  I6J44_RS04640 (I6J44_04640) pilC 950326..951552 (-) 1227 WP_016802496.1 type II secretion system F family protein Machinery gene
  I6J44_RS04645 (I6J44_04645) pilB 951579..953291 (-) 1713 WP_005804145.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6J44_RS04650 (I6J44_04650) tpiA 953583..954377 (+) 795 WP_002114826.1 triose-phosphate isomerase -
  I6J44_RS04655 (I6J44_04655) secG 954390..954719 (+) 330 WP_002115012.1 preprotein translocase subunit SecG -
  I6J44_RS04675 (I6J44_04675) rimP 955357..955881 (+) 525 WP_002114922.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45068.50 Da        Isoelectric Point: 9.8207

>NTDB_id=535430 I6J44_RS04640 WP_016802496.1 950326..951552(-) (pilC) [Acinetobacter pittii strain FDAARGOS_1214]
MTVKKAQMMPTFAYEGVDRKGIKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKNELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=535430 I6J44_RS04640 WP_016802496.1 950326..951552(-) (pilC) [Acinetobacter pittii strain FDAARGOS_1214]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCATAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAATGAATTACTTAAGCAGAAAATCAAAAAAGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACTATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCAGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.304

100

0.973
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.098

100

0.402
  pilC Thermus thermophilus HB27

37.157

98.284

0.365