Detailed information NTG0535429

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6J44_RS04635
• Genome accession: NZ_CP069537
• Coordinates: 949466..950326 (-)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain FDAARGOS_1214
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 944466..955326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J44_RS04610 (I6J44_04610)	-	945356..946666 (+)	1311	WP_002114682.1	tetratricopeptide repeat protein	-
I6J44_RS04615 (I6J44_04615)	-	946743..947069 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
I6J44_RS04620 (I6J44_04620)	rlmB	947172..947921 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6J44_RS04625 (I6J44_04625)	-	947957..948871 (+)	915	WP_002115017.1	DMT family transporter	-
I6J44_RS04630 (I6J44_04630)	coaE	948868..949464 (-)	597	WP_002115011.1	dephospho-CoA kinase	-
I6J44_RS04635 (I6J44_04635)	pilD	949466..950326 (-)	861	WP_002114758.1	prepilin peptidase	Machinery gene
I6J44_RS04640 (I6J44_04640)	pilC	950326..951552 (-)	1227	WP_016802496.1	type II secretion system F family protein	Machinery gene
I6J44_RS04645 (I6J44_04645)	pilB	951579..953291 (-)	1713	WP_005804145.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6J44_RS04650 (I6J44_04650)	tpiA	953583..954377 (+)	795	WP_002114826.1	triose-phosphate isomerase	-
I6J44_RS04655 (I6J44_04655)	secG	954390..954719 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=535429 I6J44_RS04635 WP_002114758.1 949466..950326(-) (pilD) [Acinetobacter pittii strain FDAARGOS_1214]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=535429 I6J44_RS04635 WP_002114758.1 949466..950326(-) (pilD) [Acinetobacter pittii strain FDAARGOS_1214]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGCTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437