Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6J77_RS04500 Genome accession   NZ_CP069535
Coordinates   1039733..1041004 (-) Length   423 a.a.
NCBI ID   WP_204110730.1    Uniprot ID   -
Organism   Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1034733..1046004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J77_RS04470 (I6J77_04470) - 1035360..1036154 (+) 795 WP_056717856.1 thymidylate synthase -
  I6J77_RS04475 (I6J77_04475) - 1036300..1036788 (+) 489 WP_204110726.1 dihydrofolate reductase -
  I6J77_RS04480 (I6J77_04480) - 1036794..1037750 (+) 957 WP_239309193.1 Nudix family hydrolase -
  I6J77_RS04485 (I6J77_04485) coaE 1037791..1038414 (-) 624 WP_204110727.1 dephospho-CoA kinase -
  I6J77_RS04490 (I6J77_04490) pilD 1038411..1039268 (-) 858 WP_204110728.1 A24 family peptidase Machinery gene
  I6J77_RS04495 (I6J77_04495) - 1039284..1039676 (-) 393 WP_204110729.1 endonuclease domain-containing protein -
  I6J77_RS04500 (I6J77_04500) pilC 1039733..1041004 (-) 1272 WP_204110730.1 type II secretion system F family protein Machinery gene
  I6J77_RS04505 (I6J77_04505) pilB 1041147..1042871 (-) 1725 WP_204110731.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6J77_RS04510 (I6J77_04510) - 1043181..1044035 (+) 855 WP_204110732.1 glycosyltransferase family 2 protein -
  I6J77_RS04515 (I6J77_04515) - 1044127..1045251 (+) 1125 WP_239309194.1 glycosyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46089.18 Da        Isoelectric Point: 9.7628

>NTDB_id=535390 I6J77_RS04500 WP_204110730.1 1039733..1041004(-) (pilC) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MATATATNIDKARALGAQRAEVSKLTTYEWVALDKRGKRMKGDMPAKNASLVKAELRRQGMNPQTVRERSKPLFGSSGSS
VKPGDVAVFSRQIATMMASGVPMVQAFDIIADGQKNVRFKNILLDVKQNIEGGASLHEALGRYPVQFDELYCNLVHAGEA
SGVLDTVLDTVATYKERTEAIKKKIKKALFYPMMVLAVVFLVMLIMLLFVVPVFSKTFQDAGADLPAPTQVLVNMSEFMQ
SYWWLVIGSIIGSIVAIVFAKKRSLKFAHFLDRLSLKLPVMGNIVRNSAIARFSRTLGVTFRAGVPLVEALEAVAGATGS
IVYGDAVRQMRDDISVGHQLQLAMKQTGLFPNMVVQMTAIGEESGALDNMLFKVAEFYEEEVENAVDTLSTLLEPIIMVV
LGGIVGGMVVALYLPIFKLAGTV

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=535390 I6J77_RS04500 WP_204110730.1 1039733..1041004(-) (pilC) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
ATGGCCACGGCTACCGCAACGAATATCGACAAGGCGCGCGCGCTCGGCGCCCAACGTGCCGAAGTCAGCAAGCTGACCAC
CTACGAATGGGTGGCGCTGGACAAGCGCGGCAAGCGCATGAAGGGGGACATGCCGGCGAAGAACGCCTCGCTGGTGAAGG
CCGAACTGCGCCGCCAGGGCATGAACCCGCAGACCGTGCGCGAGCGCTCCAAGCCCCTGTTCGGTTCCTCCGGCAGCTCG
GTGAAGCCGGGCGACGTGGCCGTCTTCAGCCGCCAGATCGCCACCATGATGGCGTCCGGCGTGCCGATGGTGCAGGCCTT
CGACATCATCGCCGATGGCCAGAAGAACGTCCGCTTCAAGAACATCCTGCTGGACGTGAAGCAGAACATCGAGGGCGGCG
CGTCCCTGCATGAAGCGCTGGGCCGCTACCCGGTGCAGTTCGACGAGCTCTACTGCAACCTGGTCCACGCCGGCGAAGCC
TCCGGCGTGCTGGACACCGTGCTGGACACCGTGGCGACCTACAAGGAGCGCACCGAGGCGATCAAGAAGAAGATCAAGAA
GGCGCTGTTCTACCCGATGATGGTGCTGGCCGTGGTGTTCCTGGTCATGCTGATCATGCTGCTGTTCGTGGTGCCGGTGT
TCTCCAAGACCTTCCAGGATGCCGGTGCCGACCTGCCCGCGCCGACCCAGGTGCTGGTGAACATGTCGGAGTTCATGCAG
AGCTACTGGTGGCTGGTGATCGGCAGCATCATCGGCAGCATCGTGGCGATCGTCTTCGCCAAGAAGCGCTCGCTGAAATT
CGCCCACTTCCTGGACCGGCTGTCGCTGAAGTTGCCAGTGATGGGCAATATCGTGCGCAACTCGGCGATCGCCCGCTTCT
CGCGCACGCTGGGCGTGACCTTCCGCGCCGGCGTGCCCCTGGTCGAGGCGCTGGAGGCTGTGGCTGGCGCCACTGGCAGT
ATCGTCTACGGCGACGCGGTCAGGCAGATGCGCGACGACATCTCGGTCGGTCATCAGCTGCAGCTGGCGATGAAGCAGAC
CGGCCTGTTTCCGAACATGGTGGTGCAGATGACCGCCATCGGCGAAGAATCCGGCGCACTGGACAACATGCTGTTCAAGG
TGGCCGAGTTCTACGAGGAAGAAGTGGAGAACGCGGTCGACACCCTGTCCACCCTGCTCGAGCCGATCATCATGGTGGTG
CTGGGCGGTATCGTGGGCGGCATGGTGGTGGCGCTGTACTTGCCGATCTTCAAGCTCGCCGGTACGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.386

94.326

0.513
  pilC Pseudomonas stutzeri DSM 10701

51.25

94.563

0.485
  pilC Acinetobacter baylyi ADP1

49.268

96.927

0.478
  pilC Acinetobacter baumannii D1279779

49.75

94.563

0.47
  pilG Neisseria meningitidis 44/76-A

42.636

91.489

0.39
  pilG Neisseria gonorrhoeae MS11

42.636

91.489

0.39
  pilC Vibrio campbellii strain DS40M4

39.295

93.853

0.369
  pilC Vibrio cholerae strain A1552

38.987

93.381

0.364