Detailed information NTG0535389

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6J77_RS04490
• Genome accession: NZ_CP069535
• Coordinates: 1038411..1039268 (-)
• Length: 285 a.a.
• NCBI ID: WP_204110728.1
• Uniprot ID: -
• Organism: Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1033411..1044268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J77_RS04465 (I6J77_04465)	-	1034253..1035266 (-)	1014	WP_204110725.1	TIGR00266 family protein	-
I6J77_RS04470 (I6J77_04470)	-	1035360..1036154 (+)	795	WP_056717856.1	thymidylate synthase	-
I6J77_RS04475 (I6J77_04475)	-	1036300..1036788 (+)	489	WP_204110726.1	dihydrofolate reductase	-
I6J77_RS04480 (I6J77_04480)	-	1036794..1037750 (+)	957	WP_239309193.1	Nudix family hydrolase	-
I6J77_RS04485 (I6J77_04485)	coaE	1037791..1038414 (-)	624	WP_204110727.1	dephospho-CoA kinase	-
I6J77_RS04490 (I6J77_04490)	pilD	1038411..1039268 (-)	858	WP_204110728.1	A24 family peptidase	Machinery gene
I6J77_RS04495 (I6J77_04495)	-	1039284..1039676 (-)	393	WP_204110729.1	endonuclease domain-containing protein	-
I6J77_RS04500 (I6J77_04500)	pilC	1039733..1041004 (-)	1272	WP_204110730.1	type II secretion system F family protein	Machinery gene
I6J77_RS04505 (I6J77_04505)	pilB	1041147..1042871 (-)	1725	WP_204110731.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6J77_RS04510 (I6J77_04510)	-	1043181..1044035 (+)	855	WP_204110732.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31064.19 Da
• Isoelectric Point: 7.3237

>NTDB_id=535389 I6J77_RS04490 WP_204110728.1 1038411..1039268(-) (pilD) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MPDLPFALWIALAAVLGLLVGSFLNVVILRLPERMAAAWRHEARDVLEIEGDAEPLPPGIVREPSHCPQCKHPLSALDNI
PLFGWLLLRGRCRYCQTRISIQYPLVELLSGILSAVIVWKFGPSWAALAGLMFTWVLIAAAGIDFRTQLLPDQLTLPLLW
LGLLLSLLPMFVSAPSAILAAAIGYLSLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWMGPVALLPIVLLSSLIGALVGG
SLIALRKHEREIPMPFGPFIAAAGWVWFVAGPDLLDGYLHLTGMR

Nucleotide

• Length: 858 bp

>NTDB_id=535389 I6J77_RS04490 WP_204110728.1 1038411..1039268(-) (pilD) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
ATGCCCGATCTTCCCTTCGCCCTCTGGATTGCCCTGGCTGCCGTGCTCGGCTTGTTGGTGGGCAGCTTTCTCAACGTGGT
GATCCTGCGCCTGCCCGAGCGCATGGCCGCGGCCTGGCGCCACGAGGCCCGTGACGTGCTGGAGATCGAAGGCGACGCCG
AGCCCCTGCCGCCGGGCATCGTGCGCGAGCCGTCGCACTGCCCGCAATGCAAGCATCCGCTGTCGGCGCTGGACAACATT
CCGCTGTTCGGCTGGCTGCTGCTGCGCGGGCGCTGCCGCTATTGCCAGACCAGGATCTCGATCCAGTACCCGCTGGTGGA
GTTGCTCAGCGGCATCCTGAGCGCGGTGATCGTGTGGAAGTTCGGGCCTTCGTGGGCCGCGCTGGCGGGACTGATGTTCA
CCTGGGTCTTGATCGCGGCAGCCGGCATCGACTTTCGCACTCAATTGCTGCCCGATCAGCTGACGTTGCCGCTGTTGTGG
CTTGGTCTGTTGCTGTCGCTGCTGCCGATGTTCGTCAGCGCCCCCAGCGCGATTCTTGCCGCGGCGATCGGCTACCTCAG
CCTGTGGAGCGTGTACTGGGGGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGCTGGCGG
CCCTGGGCGCGTGGATGGGCCCGGTCGCGCTGCTGCCGATCGTGCTGCTGTCCTCGCTGATCGGCGCGCTGGTGGGCGGC
AGCCTGATCGCCCTGCGCAAGCATGAGCGCGAGATCCCGATGCCGTTCGGTCCGTTCATCGCCGCCGCCGGCTGGGTCTG
GTTCGTGGCCGGCCCGGATCTGCTGGACGGCTACCTGCATCTGACCGGCATGCGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-121)

• Type IV leader peptidase family (Peptidase_A24) (132-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.309	95.439	0.509
pilD	Acinetobacter nosocomialis M2	52.536	96.842	0.509
pilD	Acinetobacter baumannii D1279779	52.174	96.842	0.505
pilD	Vibrio campbellii strain DS40M4	50.725	96.842	0.491
pilD	Neisseria gonorrhoeae MS11	48.387	97.895	0.474