Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   I6J77_RS04505 Genome accession   NZ_CP069535
Coordinates   1041147..1042871 (-) Length   574 a.a.
NCBI ID   WP_204110731.1    Uniprot ID   -
Organism   Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036147..1047871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J77_RS04475 (I6J77_04475) - 1036300..1036788 (+) 489 WP_204110726.1 dihydrofolate reductase -
  I6J77_RS04480 (I6J77_04480) - 1036794..1037750 (+) 957 WP_239309193.1 Nudix family hydrolase -
  I6J77_RS04485 (I6J77_04485) coaE 1037791..1038414 (-) 624 WP_204110727.1 dephospho-CoA kinase -
  I6J77_RS04490 (I6J77_04490) pilD 1038411..1039268 (-) 858 WP_204110728.1 A24 family peptidase Machinery gene
  I6J77_RS04495 (I6J77_04495) - 1039284..1039676 (-) 393 WP_204110729.1 endonuclease domain-containing protein -
  I6J77_RS04500 (I6J77_04500) pilC 1039733..1041004 (-) 1272 WP_204110730.1 type II secretion system F family protein Machinery gene
  I6J77_RS04505 (I6J77_04505) pilB 1041147..1042871 (-) 1725 WP_204110731.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6J77_RS04510 (I6J77_04510) - 1043181..1044035 (+) 855 WP_204110732.1 glycosyltransferase family 2 protein -
  I6J77_RS04515 (I6J77_04515) - 1044127..1045251 (+) 1125 WP_239309194.1 glycosyltransferase -
  I6J77_RS04520 (I6J77_04520) - 1045260..1046012 (+) 753 WP_204110734.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  I6J77_RS04525 (I6J77_04525) - 1046133..1047212 (-) 1080 WP_239309195.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 62592.21 Da        Isoelectric Point: 6.0899

>NTDB_id=535391 I6J77_RS04505 WP_204110731.1 1041147..1042871(-) (pilB) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MSSQLQPSLTGLSGMARRLVSEGVMAEDVVRKAMADSGQQKAALGTWLLDHGLVDSAELTRVASVEFGMPMMDVASLNPT
TMPLDLISEALITKHQALPLFRRGKRLYVGIADPMQSHALDEIKFHSNCMVEPILVERNSLQKVIESLLNNLRNTMPDMG
GGDLDELDIEAGDGESESSSGVDATGNDDAPVVKFVNKVLVDAIRRGASDIHFEPFETQYRVRVRMDGILSTVANPPMKM
ANRISSRIKVMSQLDIAEKRVPQDGRIKLNLSKTRAVDFRVSVLPTLFGEKIVMRILDGSSARIGIEKLGYEPNQQKLYI
DAIHKPYGLVLVTGPTGSGKTVSLYTGLNMLNTPERNISTVEDPVEIRVEGINQVQQNVKRGMTFASALRSFLRQDPDVI
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAAQTVSRLMNMGIAPYNITSSVTLIIAQRLARRLHDCKKPMDLPPQVL
LAAGFSQADIDEGMTIYEAGGCDGCNDGYKGRVGIYQVMPMLEEIQKIILQGGNTMEIAAAAKAAGVNDLRASALLKVKQ
GLTSLIEIDRVTKE

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=535391 I6J77_RS04505 WP_204110731.1 1041147..1042871(-) (pilB) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
ATGTCATCTCAATTGCAACCGTCGCTTACGGGTCTGTCCGGCATGGCGCGCCGGCTGGTGTCCGAAGGCGTGATGGCGGA
GGACGTGGTCCGCAAGGCCATGGCGGACAGCGGGCAGCAGAAGGCTGCGCTGGGTACCTGGTTGCTGGATCACGGCTTGG
TCGATAGTGCGGAGCTGACGCGGGTGGCGTCGGTCGAGTTCGGCATGCCGATGATGGACGTGGCCTCGTTGAATCCGACC
ACGATGCCGCTGGACCTGATCAGCGAGGCCTTGATCACCAAGCACCAGGCGCTGCCGCTGTTCCGTCGCGGCAAGCGGCT
TTACGTGGGCATCGCCGACCCGATGCAGTCGCATGCGCTGGACGAGATCAAGTTCCACTCCAACTGCATGGTCGAGCCGA
TCCTGGTGGAGCGCAACTCGCTGCAGAAGGTGATCGAAAGCCTGCTGAACAACCTGCGCAACACCATGCCGGACATGGGC
GGCGGCGACCTCGACGAGCTCGATATCGAGGCCGGCGACGGCGAAAGCGAATCGAGCAGCGGCGTCGATGCCACCGGCAA
CGACGACGCGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTCGATGCGATCCGTCGCGGCGCCTCGGACATCCATTTCG
AACCGTTCGAGACGCAGTACCGGGTGCGCGTGCGCATGGACGGCATCCTCAGCACGGTGGCCAACCCGCCGATGAAGATG
GCCAACCGCATCTCGTCGCGCATCAAAGTGATGTCTCAGCTGGATATCGCCGAAAAGCGCGTGCCGCAGGACGGCCGCAT
CAAGCTCAACCTGTCCAAGACCCGCGCAGTCGACTTCCGCGTCAGCGTGCTGCCCACGCTGTTCGGCGAGAAGATCGTGA
TGCGTATCCTGGACGGCTCCTCGGCCAGGATCGGCATCGAGAAGCTGGGCTACGAGCCGAATCAGCAGAAGCTCTACATC
GACGCCATCCACAAGCCGTACGGCCTGGTGCTGGTCACCGGCCCCACCGGCTCGGGCAAGACGGTGTCGCTGTACACCGG
CCTGAACATGCTCAACACGCCCGAACGCAACATTTCCACCGTGGAAGACCCGGTGGAAATCCGCGTGGAAGGCATCAACC
AGGTGCAGCAGAACGTCAAGCGCGGCATGACCTTCGCCAGCGCCCTGCGCTCGTTCCTGCGCCAGGATCCGGACGTGATC
ATGGTCGGCGAAATCCGCGACCTGGAAACCGCCGAAATCGCGATCAAGGCCGCGCAGACCGGCCACATGGTGCTGTCCAC
CCTGCACACCAACGACGCGGCGCAGACGGTTTCGCGCCTGATGAACATGGGCATCGCCCCGTACAACATCACCTCGTCGG
TCACCCTGATCATCGCCCAGCGCTTGGCGCGGCGCCTGCATGATTGCAAGAAGCCGATGGATCTGCCGCCGCAGGTGCTT
CTGGCGGCCGGCTTCAGCCAGGCCGATATCGACGAGGGGATGACGATCTACGAGGCCGGCGGCTGCGACGGCTGCAATGA
CGGCTACAAGGGCCGCGTGGGCATTTACCAGGTGATGCCGATGCTGGAGGAGATCCAGAAGATCATCCTGCAGGGCGGCA
ACACCATGGAGATCGCGGCGGCGGCCAAGGCCGCCGGGGTGAACGACCTGCGCGCTTCGGCCCTGCTGAAGGTGAAGCAG
GGTCTGACCAGCCTGATCGAGATCGACCGCGTGACCAAGGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(198-465)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(48-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

53.521

98.955

0.53
  pilB Acinetobacter baylyi ADP1

53.805

98.432

0.53
  pilB Legionella pneumophila strain ERS1305867

50.528

98.955

0.5
  pilB Vibrio cholerae strain A1552

49.906

92.509

0.462
  pilB Vibrio campbellii strain DS40M4

49.153

92.509

0.455
  pilF Neisseria gonorrhoeae MS11

46.512

97.387

0.453
  pilB Vibrio parahaemolyticus RIMD 2210633

48.964

92.509

0.453
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.268

100

0.385
  pilF Thermus thermophilus HB27

37.456

100

0.375