Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6J32_RS09730 Genome accession   NZ_CP069437
Coordinates   2009707..2010930 (+) Length   407 a.a.
NCBI ID   WP_159375395.1    Uniprot ID   A0A6P1KF27
Organism   Moraxella osloensis strain FDAARGOS_1202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2004707..2015930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J32_RS09700 (I6J32_09710) rimP 2005226..2005735 (-) 510 WP_100270612.1 ribosome maturation factor RimP -
  I6J32_RS09715 (I6J32_09725) secG 2006299..2006619 (-) 321 WP_036594931.1 preprotein translocase subunit SecG -
  I6J32_RS09720 (I6J32_09730) tpiA 2006711..2007520 (-) 810 WP_204155406.1 triose-phosphate isomerase -
  I6J32_RS09725 (I6J32_09735) pilB 2007944..2009650 (+) 1707 WP_204155407.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6J32_RS09730 (I6J32_09740) pilC 2009707..2010930 (+) 1224 WP_159375395.1 type II secretion system F family protein Machinery gene
  I6J32_RS09735 (I6J32_09745) pilD 2010936..2011811 (+) 876 WP_204155408.1 prepilin peptidase Machinery gene
  I6J32_RS09740 (I6J32_09750) coaE 2011808..2012464 (+) 657 WP_228288305.1 dephospho-CoA kinase -
  I6J32_RS09745 (I6J32_09755) - 2012522..2013928 (-) 1407 WP_204155409.1 nicotinate phosphoribosyltransferase -
  I6J32_RS09750 (I6J32_09760) - 2013997..2015100 (-) 1104 WP_204155410.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44841.84 Da        Isoelectric Point: 9.6980

>NTDB_id=534667 I6J32_RS09730 WP_159375395.1 2009707..2010930(+) (pilC) [Moraxella osloensis strain FDAARGOS_1202]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIKVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFNSFGAELPAFTQMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAILGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=534667 I6J32_RS09730 WP_159375395.1 2009707..2010930(+) (pilC) [Moraxella osloensis strain FDAARGOS_1202]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAACTACGCAAGCAAGGCATCAAAGTCAAGACGATTAAGAAAAAAC
CCAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATCGATATTGCTATCTTTGTGCGGCAGTTGGCTACAATGATG
AAAGCGGGCGTTCCCCTTACTCAGTCGTTTGAAATCGTTGCAGATGCGCTTGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAATCAGAAGTGGAATCAGGTAGCACCTTTGCTGCTGCGCTGCGCAAACATCCCAGATATTTTGATGACCTGT
TTTGTTCATTGGTAGAGGCAGGTGAGCAATCAGGGGCACTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCTTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGTTGGTCAAAGTGGTACCGGTATTTGCTGATTTATTCAATTCATTTGGCGCAGAATTACCTGCGTTTACCCAAA
TGGTGGTCAATATGTCCGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAGCCCTTTAATGATTTTTTAGACCGACTGACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTACCAAGCGGTGGTTGCGCGTTTTTCCCGCACTTTATCTACCACTTTTGCCGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACCGCTGGGGCAACCAATAATGTGGTATTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACCGGT
CAACAGCTGCAGTTTTCGATGCGCTCTACCAATCTTTTTCCCAGTATGGCGATCCAAATGGTTGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGACGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTATTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1KF27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.833

100

0.71
  pilC Acinetobacter baylyi ADP1

69.363

100

0.695
  pilC Pseudomonas stutzeri DSM 10701

64.304

97.052

0.624
  pilC Legionella pneumophila strain ERS1305867

55.89

98.034

0.548
  pilG Neisseria gonorrhoeae MS11

44.697

97.297

0.435
  pilC Vibrio cholerae strain A1552

43.382

100

0.435
  pilG Neisseria meningitidis 44/76-A

44.444

97.297

0.432
  pilC Vibrio campbellii strain DS40M4

41.75

98.28

0.41