Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JNO50_RS16820 Genome accession   NZ_CP069161
Coordinates   3618602..3619822 (-) Length   406 a.a.
NCBI ID   WP_189531571.1    Uniprot ID   A0A918P0D0
Organism   Paludibacterium paludis strain BCRC 80514     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3613602..3624822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO50_RS16790 tsaE 3614419..3614907 (+) 489 WP_189531757.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  JNO50_RS16795 - 3614865..3616109 (+) 1245 WP_189531563.1 N-acetylmuramoyl-L-alanine amidase -
  JNO50_RS16800 yacG 3616113..3616310 (-) 198 WP_189531565.1 DNA gyrase inhibitor YacG -
  JNO50_RS16805 zapD 3616319..3617077 (-) 759 WP_189531567.1 cell division protein ZapD -
  JNO50_RS16810 coaE 3617108..3617743 (-) 636 WP_189531569.1 dephospho-CoA kinase -
  JNO50_RS16815 - 3617733..3618605 (-) 873 WP_229804493.1 A24 family peptidase -
  JNO50_RS16820 pilC 3618602..3619822 (-) 1221 WP_189531571.1 type II secretion system F family protein Machinery gene
  JNO50_RS16825 pilF 3619819..3621528 (-) 1710 WP_189531573.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JNO50_RS16830 - 3621661..3622764 (-) 1104 WP_189531575.1 porin -
  JNO50_RS16835 - 3623221..3624294 (-) 1074 WP_189531577.1 porin -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44145.92 Da        Isoelectric Point: 10.5869

>NTDB_id=532559 JNO50_RS16820 WP_189531571.1 3618602..3619822(-) (pilC) [Paludibacterium paludis strain BCRC 80514]
MSRAATRKPSSGGIWVWEGKDRAGKKVGGETRAESATLARAQLRRQGIAVSRIRRRRVTFGDRIGPKDIALFTRQLATLM
KAGVPLLQAFDIAARGASKPSMTRLLLDVRMDVETGQSLAESFRRHPRHFDELYCNVVAAGETGGVLEALLDKLARYQEK
TLMLKRKVKSAMIYPALVLLAGLGVTSIILIFVIPSFKDLFASFGAELPGPTRLVMTLSDAFVALRWVLAAGLVGGAFAI
RQLFQRSQAFRDRIDRLTLRLPVLGNIVTKAAVARWSRTLATLFAAGVPLVEALESVAGAAGNKVFADATRMIQQDVSKG
SSLSASMQRTDCFPVMVLQMTTIGEEAGMVDDMLNKIADFYEEEVDNAVAVLSSLIEPFIIVVLGVLVGGLMIAMYLPIF
DMGKIV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=532559 JNO50_RS16820 WP_189531571.1 3618602..3619822(-) (pilC) [Paludibacterium paludis strain BCRC 80514]
ATGAGCCGCGCCGCTACGCGCAAACCGTCGTCCGGCGGGATATGGGTCTGGGAAGGCAAGGATCGGGCTGGCAAGAAGGT
CGGCGGAGAAACCCGCGCAGAAAGCGCGACGCTGGCGAGAGCGCAGTTACGCCGTCAGGGTATCGCGGTTTCGCGAATCC
GCCGTCGGCGCGTGACGTTCGGCGATCGCATCGGTCCCAAGGATATCGCGCTCTTTACCCGGCAGTTGGCGACGCTGATG
AAAGCCGGTGTACCGCTGTTGCAGGCGTTCGATATTGCCGCTCGTGGCGCGTCCAAACCATCGATGACACGATTGTTGCT
CGATGTGCGCATGGACGTGGAGACCGGGCAGTCCCTCGCCGAGTCCTTTCGCCGCCATCCCCGGCATTTTGACGAGTTGT
ACTGTAATGTCGTGGCGGCGGGAGAAACCGGCGGTGTGCTGGAGGCCTTGCTGGACAAATTGGCCCGCTATCAGGAAAAA
ACCCTGATGCTCAAGCGCAAGGTCAAATCGGCGATGATCTATCCTGCGCTGGTCCTGCTTGCCGGACTGGGGGTGACGAG
TATCATCCTGATCTTTGTCATCCCGAGTTTCAAGGATCTGTTCGCCAGCTTCGGGGCCGAATTGCCCGGGCCCACCCGTC
TTGTCATGACTCTTTCGGATGCGTTTGTCGCGTTGCGCTGGGTGTTGGCGGCGGGGCTTGTCGGCGGGGCCTTCGCCATC
CGCCAATTGTTTCAACGAAGCCAGGCGTTCAGGGATCGCATTGACCGACTGACGCTTCGTCTGCCCGTGCTTGGCAATAT
CGTCACCAAGGCGGCCGTCGCCCGCTGGAGCCGGACGTTGGCGACCCTGTTCGCGGCGGGTGTTCCATTGGTCGAAGCGT
TGGAGTCGGTGGCGGGCGCGGCGGGCAACAAGGTATTCGCCGATGCGACGCGGATGATTCAACAGGATGTCAGCAAGGGC
TCGTCGCTGAGCGCGTCCATGCAACGGACGGACTGTTTCCCCGTCATGGTGCTGCAGATGACCACCATTGGCGAAGAAGC
GGGTATGGTTGATGACATGTTGAACAAAATTGCCGATTTTTATGAAGAAGAAGTGGATAATGCGGTGGCTGTACTCTCAA
GTCTGATCGAGCCATTTATCATCGTGGTGCTGGGCGTTCTGGTCGGCGGTTTGATGATCGCCATGTACTTGCCCATTTTC
GATATGGGGAAAATTGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.846

99.261

0.534
  pilG Neisseria gonorrhoeae MS11

49.873

96.798

0.483
  pilC Acinetobacter baylyi ADP1

47.794

100

0.48
  pilG Neisseria meningitidis 44/76-A

49.364

96.798

0.478
  pilC Acinetobacter baumannii D1279779

46.683

100

0.468
  pilC Legionella pneumophila strain ERS1305867

48.101

97.291

0.468
  pilC Thermus thermophilus HB27

41

98.522

0.404
  pilC Vibrio cholerae strain A1552

41.162

97.537

0.401
  pilC Vibrio campbellii strain DS40M4

40.955

98.03

0.401