Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JM964_RS00355 Genome accession   NZ_CP068708
Coordinates   62536..63717 (+) Length   393 a.a.
NCBI ID   WP_044681379.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 57536..68717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS00340 (JM964_00340) mutL 59110..61047 (+) 1938 WP_172060540.1 DNA mismatch repair endonuclease MutL -
  JM964_RS00345 (JM964_00345) ruvA 61086..61676 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA -
  JM964_RS00350 (JM964_00350) - 61930..62499 (+) 570 WP_202847584.1 DNA-3-methyladenine glycosylase I -
  JM964_RS00355 (JM964_00355) cinA 62536..63717 (+) 1182 WP_044681379.1 competence/damage-inducible protein A Machinery gene
  JM964_RS00360 (JM964_00360) recA 63769..64920 (+) 1152 WP_044679554.1 recombinase RecA Machinery gene
  JM964_RS00365 (JM964_00365) spx 65156..65554 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  JM964_RS00370 (JM964_00370) - 65654..65920 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  JM964_RS00375 (JM964_00375) ruvX 65920..66339 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  JM964_RS00380 (JM964_00380) - 66351..66671 (+) 321 WP_044679552.1 DUF1292 domain-containing protein -
  JM964_RS00385 (JM964_00385) - 66798..68343 (+) 1546 Protein_58 IS1182 family transposase -
  JM964_RS10345 - 68547..68669 (+) 123 WP_257571720.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42917.73 Da        Isoelectric Point: 4.3708

>NTDB_id=530527 JM964_RS00355 WP_044681379.1 62536..63717(+) (cinA) [Streptococcus suis strain ID33329]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGVDVYFHTAVGDNENRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMVEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELNLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=530527 JM964_RS00355 WP_044681379.1 62536..63717(+) (cinA) [Streptococcus suis strain ID33329]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAGTTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
TTGGCAACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGGAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGGTTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGCATTGG
TGAAAGCCAGTTAGTGACTGTTTTGGCGGACTTGATCGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAACCTGGCTT
TGGCTGATCAACCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

96.183

100

0.962
  cinA Streptococcus mitis SK321

56.49

100

0.598
  cinA Streptococcus pneumoniae TIGR4

56.49

100

0.598
  cinA Streptococcus pneumoniae Rx1

56.49

100

0.598
  cinA Streptococcus pneumoniae R6

56.49

100

0.598
  cinA Streptococcus mitis NCTC 12261

56.25

100

0.595
  cinA Streptococcus pneumoniae D39

56.25

100

0.595
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Bacillus subtilis subsp. subtilis str. 168

41.432

99.491

0.412