Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JM964_RS00360 Genome accession   NZ_CP068708
Coordinates   63769..64920 (+) Length   383 a.a.
NCBI ID   WP_044679554.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58769..69920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS00340 (JM964_00340) mutL 59110..61047 (+) 1938 WP_172060540.1 DNA mismatch repair endonuclease MutL -
  JM964_RS00345 (JM964_00345) ruvA 61086..61676 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA -
  JM964_RS00350 (JM964_00350) - 61930..62499 (+) 570 WP_202847584.1 DNA-3-methyladenine glycosylase I -
  JM964_RS00355 (JM964_00355) cinA 62536..63717 (+) 1182 WP_044681379.1 competence/damage-inducible protein A Machinery gene
  JM964_RS00360 (JM964_00360) recA 63769..64920 (+) 1152 WP_044679554.1 recombinase RecA Machinery gene
  JM964_RS00365 (JM964_00365) spx 65156..65554 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  JM964_RS00370 (JM964_00370) - 65654..65920 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  JM964_RS00375 (JM964_00375) ruvX 65920..66339 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  JM964_RS00380 (JM964_00380) - 66351..66671 (+) 321 WP_044679552.1 DUF1292 domain-containing protein -
  JM964_RS00385 (JM964_00385) - 66798..68343 (+) 1546 Protein_58 IS1182 family transposase -
  JM964_RS10345 - 68547..68669 (+) 123 WP_257571720.1 hypothetical protein -
  JM964_RS00390 (JM964_00390) rpsJ 68877..69185 (+) 309 WP_014735259.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40816.58 Da        Isoelectric Point: 4.9545

>NTDB_id=530528 JM964_RS00360 WP_044679554.1 63769..64920(+) (recA) [Streptococcus suis strain ID33329]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVVEVATEEAPVVAEEIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=530528 JM964_RS00360 WP_044679554.1 63769..64920(+) (recA) [Streptococcus suis strain ID33329]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTATTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGCAAACTCGGTGCATCCATCAACAAAACCAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGGACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATTCGTGTTCATTATGGATT
GATTGAAGCAGATGGAGTTGTAGAAGTTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTGTCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Bacillus subtilis subsp. subtilis str. 168

67.56

87.728

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Acinetobacter baumannii D1279779

60.405

90.339

0.546
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.507

92.167

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Ralstonia pseudosolanacearum GMI1000

59.574

85.901

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499