Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABCA12_RS01615 Genome accession   NZ_CP068253
Coordinates   337766..339904 (+) Length   712 a.a.
NCBI ID   WP_201898229.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332766..344904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS01595 (ABCA12_0317) pilM 334738..335796 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  ABCA12_RS01600 (ABCA12_0318) pilN 335796..336440 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  ABCA12_RS01605 (ABCA12_0319) pilO 336437..337177 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABCA12_RS01610 (ABCA12_0320) pilP 337177..337704 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  ABCA12_RS01615 (ABCA12_0321) pilQ 337766..339904 (+) 2139 WP_201898229.1 type IV pilus secretin PilQ family protein Machinery gene
  ABCA12_RS01620 (ABCA12_0322) aroK 339924..340484 (+) 561 WP_201897979.1 shikimate kinase AroK -
  ABCA12_RS01625 (ABCA12_0323) aroB 340505..341587 (+) 1083 WP_201897980.1 3-dehydroquinate synthase -
  ABCA12_RS01630 (ABCA12_0324) - 341604..342482 (+) 879 WP_201897981.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 77215.61 Da        Isoelectric Point: 5.7118

>NTDB_id=528624 ABCA12_RS01615 WP_201898229.1 337766..339904(+) (pilQ) [Acinetobacter junii strain CAM121]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSINIAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPALISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLAPLQTEYIQLSYAKAVDIEKLITQGKNGSGNGNRNQGANDLLGDS
VGSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDL
LVGGSDTTLWNLREPTADSETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPK
VLTADKQAAKIESGTQIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQLTINKNT
IDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=528624 ABCA12_RS01615 WP_201898229.1 337766..339904(+) (pilQ) [Acinetobacter junii strain CAM121]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACATCCATT
CCTGTTTCAACCAATGAAGCAAGTTCCATCAATATAGCTGCAGATGATCAGCGTGCTCGTTTGATCGTGAACCTAAAGGA
TTCTGGTGCATTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCAGCAAAACCAGCTTTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGGGTTTCTAATATTGGTTTTCAAAGAGGAAATCAAGGTGAGGGGTTA
GTTGTTATCGATTTATTGGGGGGTAATACACCAGTAGATGTACAACAACAAGGAAGTAAAATTGTTGTTCGTACTCTTGG
AAATAAAATCCCAACGCACTTGGCGCGTCGTTTAAATACTAATGATTTTGCGACCCCCGTAGCAAGTATTGATGCTTATA
ACGATAAAGGAAATGGGGTTATTACTATTCAATCTGCGGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAATCACCGAATAAAGCTAAACCACAGACCTATACTGGAAATAAAATTTCATT
GGATTTCCAAGATATTGAAGTCCGCCGTGTTTTGCAATTATTAGCAGACTTTACAGGAATCAATATGGTTGCTGCTGATA
CTGTGCAAGGAAATATTACGTTACGTCTCAAGGATGTTCCTTGGGATCAAGCACTCGACATCGTTTTAAAAACGAAAAAT
CTGGATAAGCGTCGTAATGGAAATGTAATTTGGATTGCACCTGTTACAGAGCTTATCAAAGCGGAAGAGGATGAGGCAAA
AGCAATCGCCCAAAGTGTGAAACTTGCACCTTTGCAAACAGAGTATATTCAATTGAGTTATGCGAAAGCGGTTGATATTG
AAAAGCTTATTACTCAAGGTAAAAATGGCTCAGGTAATGGTAATCGTAACCAGGGAGCTAATGATCTGTTAGGGGATAGT
GTAGGTAGTTTATTGAGCCCACGCGGAACTGTTTCGATTGACCCACGGACAAATACGTTGATTATAAATGATACATCACA
AAAGATTGATCAAATACGTAAAATGATCGATTTACTCGATGTTTCGGTTAAGCAGGTTATGATTGAAGCACGTATTGTGC
GTGCGAGTACAGACTTTACCAAAGAGATGGGGGTAAAGTGGGGGATATTGTCTCAAGGTATAGCATCTAATAATGATTTG
CTTGTTGGTGGTAGTGATACAACTTTATGGAATTTACGAGAACCTACAGCTGATAGTGAAACTGGTGGTTGGAAATATGA
TATTGAGCGTCCAGATAATCTGAATGTGAATTTAGGTGCTGTGACACCTGGAGCAAGTCGTATTGCTTTTGGTTTAATTA
GTCTTTCAGATTTTATGTTGGACCTAGAGTTGTCGGCTGTTCAGGCTGATGGTTATGGTGAAGTAATCTCAACTCCGAAA
GTTCTAACCGCAGATAAGCAAGCTGCAAAAATTGAATCAGGGACTCAGATTCCTTACTCATCTTCTACTGGGGCGGGAGC
GAATGCAGTTCCTAAAACAGAGTTTATTGATGCGACATTAAGTTTAGATGTTACGCCGAGTATCACTCCTGAAGGTAAGG
TGATGATGAAATTAAACATCACCAAAGACTCACCAGGAACGCCAACACCTACAGGGCAGTTGACGATTAATAAAAATACG
ATTGATACCAATGTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATTTTTGAGCAAGAAAATATTAACTCTCA
GACCAAAGTTCCATTCTTGGGTGATTTGCCTTATGTTGGGAAATTATTCCGTAGAGAGTCTAAGCAAGACAATAAACGCG
AGTTGCTTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-445)

AMIN domain (AMIN)

(37-122)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Secretin and TonB N terminus short domain (STN)

(292-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.482

100

0.77
  pilQ Acinetobacter baumannii strain A118

75.482

100

0.77
  comQ Acinetobacter baylyi ADP1

73.435

100

0.742
  pilQ Pseudomonas aeruginosa PAK

41.295

97.612

0.403
  pilQ Legionella pneumophila strain ERS1305867

39.349

94.944

0.374
  pilQ Legionella pneumophila strain Lp02

39.169

94.663

0.371