Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABCA12_RS01605 Genome accession   NZ_CP068253
Coordinates   336437..337177 (+) Length   246 a.a.
NCBI ID   WP_075696026.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331437..342177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS01590 (ABCA12_0316) ponA 331996..334575 (-) 2580 WP_112986739.1 penicillin-binding protein PBP1a -
  ABCA12_RS01595 (ABCA12_0317) pilM 334738..335796 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  ABCA12_RS01600 (ABCA12_0318) pilN 335796..336440 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  ABCA12_RS01605 (ABCA12_0319) pilO 336437..337177 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABCA12_RS01610 (ABCA12_0320) pilP 337177..337704 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  ABCA12_RS01615 (ABCA12_0321) pilQ 337766..339904 (+) 2139 WP_201898229.1 type IV pilus secretin PilQ family protein Machinery gene
  ABCA12_RS01620 (ABCA12_0322) aroK 339924..340484 (+) 561 WP_201897979.1 shikimate kinase AroK -
  ABCA12_RS01625 (ABCA12_0323) aroB 340505..341587 (+) 1083 WP_201897980.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27775.32 Da        Isoelectric Point: 4.6196

>NTDB_id=528622 ABCA12_RS01605 WP_075696026.1 336437..337177(+) (pilO) [Acinetobacter junii strain CAM121]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=528622 ABCA12_RS01605 WP_075696026.1 336437..337177(+) (pilO) [Acinetobacter junii strain CAM121]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAACTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAAAACATTCGCTTGGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATAGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACACGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AAACCTACCGTTATGTGGGTGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683