Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABCA12_RS01600 Genome accession   NZ_CP068253
Coordinates   335796..336440 (+) Length   214 a.a.
NCBI ID   WP_004909633.1    Uniprot ID   S7WRY4
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330796..341440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS01585 (ABCA12_0315) - 331163..331981 (+) 819 WP_004964610.1 putative RNA methyltransferase -
  ABCA12_RS01590 (ABCA12_0316) ponA 331996..334575 (-) 2580 WP_112986739.1 penicillin-binding protein PBP1a -
  ABCA12_RS01595 (ABCA12_0317) pilM 334738..335796 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  ABCA12_RS01600 (ABCA12_0318) pilN 335796..336440 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  ABCA12_RS01605 (ABCA12_0319) pilO 336437..337177 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABCA12_RS01610 (ABCA12_0320) pilP 337177..337704 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  ABCA12_RS01615 (ABCA12_0321) pilQ 337766..339904 (+) 2139 WP_201898229.1 type IV pilus secretin PilQ family protein Machinery gene
  ABCA12_RS01620 (ABCA12_0322) aroK 339924..340484 (+) 561 WP_201897979.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23774.17 Da        Isoelectric Point: 5.1372

>NTDB_id=528621 ABCA12_RS01600 WP_004909633.1 335796..336440(+) (pilN) [Acinetobacter junii strain CAM121]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVSSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=528621 ABCA12_RS01600 WP_004909633.1 335796..336440(+) (pilN) [Acinetobacter junii strain CAM121]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATATTGTGTAGG
GGTCGCTGCATTAGGTGTGGCGTCAGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGATTGCAAGGTCAAAGACCTGTTGCTGTACGTTTAATCGATGAATTGGTGCG
AGTTACTCCGCCAACCATGTATTTGACTAAATTTACACGTACAGGAGATAAGTTCACGATAGAAGGTAAAGCTGAAAGTC
CAAATACGGTTGCTGAGTTACTGAGAAATCTTGAAGCATCGCCGTGGTATCGCAATGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACTGTCAGCTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGTACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WRY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.636

100

0.766
  comN Acinetobacter baylyi ADP1

73.333

98.131

0.72