Detailed information NTG0528623

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K8B93_RS18985
• Genome accession: NZ_CP082772
• Coordinates: 3924132..3925124 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O2:H1 strain HM670
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3919132..3930124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8B93_RS18965 (K8B93_18865)	ygbM	3919763..3920539 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
K8B93_RS18970 (K8B93_18870)	ygbN	3920628..3921992 (+)	1365	WP_000104433.1	GntP family transporter	-
K8B93_RS18975 (K8B93_18875)	-	3922135..3923178 (-)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
K8B93_RS18980 (K8B93_18880)	-	3923403..3923954 (+)	552	WP_001179443.1	flavodoxin family protein	-
K8B93_RS18985 (K8B93_18885)	rpoS	3924132..3925124 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K8B93_RS18990 (K8B93_18890)	nlpD	3925187..3926281 (-)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
K8B93_RS18995 (K8B93_18895)	pcm	3926466..3927092 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
K8B93_RS19000 (K8B93_18900)	surE	3927086..3927847 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K8B93_RS19005 (K8B93_18905)	truD	3927828..3928877 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
K8B93_RS19010 (K8B93_18910)	ispF	3928874..3929353 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K8B93_RS19015 (K8B93_18915)	ispD	3929353..3930063 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=528623 K8B93_RS18985 WP_000081550.1 3924132..3925124(-) (rpoS) [Escherichia coli O2:H1 strain HM670]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=528623 K8B93_RS18985 WP_000081550.1 3924132..3925124(-) (rpoS) [Escherichia coli O2:H1 strain HM670]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGCCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715