Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABCA12_RS01610 Genome accession   NZ_CP068253
Coordinates   337177..337704 (+) Length   175 a.a.
NCBI ID   WP_004909624.1    Uniprot ID   S7WVB7
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332177..342704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS01595 (ABCA12_0317) pilM 334738..335796 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  ABCA12_RS01600 (ABCA12_0318) pilN 335796..336440 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  ABCA12_RS01605 (ABCA12_0319) pilO 336437..337177 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABCA12_RS01610 (ABCA12_0320) pilP 337177..337704 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  ABCA12_RS01615 (ABCA12_0321) pilQ 337766..339904 (+) 2139 WP_201898229.1 type IV pilus secretin PilQ family protein Machinery gene
  ABCA12_RS01620 (ABCA12_0322) aroK 339924..340484 (+) 561 WP_201897979.1 shikimate kinase AroK -
  ABCA12_RS01625 (ABCA12_0323) aroB 340505..341587 (+) 1083 WP_201897980.1 3-dehydroquinate synthase -
  ABCA12_RS01630 (ABCA12_0324) - 341604..342482 (+) 879 WP_201897981.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19460.68 Da        Isoelectric Point: 9.3195

>NTDB_id=528623 ABCA12_RS01610 WP_004909624.1 337177..337704(+) (pilP) [Acinetobacter junii strain CAM121]
MNNYKLLFSFMAGLVLVGCDSKIDAVNQKMAEIRNEPALPIEPAPVFSPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTNETIALIQTPDRQIERVQVGNYLGMNQGRVVKISPTQIDLVEIVPDGRDG
YVERPRTLVLIGMAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=528623 ABCA12_RS01610 WP_004909624.1 337177..337704(+) (pilP) [Acinetobacter junii strain CAM121]
ATGAATAATTATAAATTATTGTTTAGTTTTATGGCCGGGCTTGTTTTGGTTGGATGTGATTCAAAAATTGACGCTGTAAA
CCAAAAAATGGCTGAAATTCGGAATGAACCTGCTTTACCTATTGAGCCAGCACCGGTATTTAGCCCTGTACCATTATTTA
ACTATTCAGCACATCAATTGAAAAGTCCATTTATGCCAAGCTCATTGGCAGCTGAGTTGAAAATAATGGCGGGTAAACGT
GTTTATCCAAATTTCAATCGTCAACCACAACCACTGGAAAGTTATGCGTTGGAATCCCTAAATATGAAGGGTAGCATGCG
TGGTAAAACGAATGAAACGATAGCGCTGATTCAGACCCCGGACCGACAAATTGAGCGGGTGCAGGTTGGAAACTACTTAG
GAATGAATCAAGGTCGAGTGGTAAAAATTAGTCCGACTCAGATTGATTTGGTGGAAATTGTACCAGATGGGCGTGATGGT
TATGTGGAGAGACCAAGAACACTCGTTCTAATTGGTATGGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

79.532

97.714

0.777
  comL Acinetobacter baylyi ADP1

70.286

100

0.703