Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JG554_RS06505 Genome accession   NZ_CP068241
Coordinates   1360052..1360369 (+) Length   105 a.a.
NCBI ID   WP_070039360.1    Uniprot ID   -
Organism   Staphylococcus sp. 11-B-312     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355052..1365369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS06475 (JG554_06475) - 1355518..1355717 (+) 200 Protein_1243 YqgQ family protein -
  JG554_RS06480 (JG554_06480) - 1356024..1357010 (+) 987 WP_070039362.1 glucokinase -
  JG554_RS06485 (JG554_06485) - 1357010..1357333 (+) 324 WP_046208167.1 MTH1187 family thiamine-binding protein -
  JG554_RS06490 (JG554_06490) - 1357336..1357959 (+) 624 WP_046208168.1 MBL fold metallo-hydrolase -
  JG554_RS06495 (JG554_06495) comGA 1358019..1358993 (+) 975 WP_046208169.1 competence type IV pilus ATPase ComGA Machinery gene
  JG554_RS06500 (JG554_06500) comGB 1358965..1360032 (+) 1068 WP_070039361.1 competence type IV pilus assembly protein ComGB -
  JG554_RS06505 (JG554_06505) comGC 1360052..1360369 (+) 318 WP_070039360.1 competence type IV pilus major pilin ComGC Machinery gene
  JG554_RS06510 (JG554_06510) comGD 1360359..1360799 (+) 441 WP_052722073.1 competence type IV pilus minor pilin ComGD -
  JG554_RS06515 (JG554_06515) - 1360780..1361073 (+) 294 WP_070039359.1 hypothetical protein -
  JG554_RS06525 (JG554_06525) - 1361616..1362182 (+) 567 WP_260852391.1 shikimate kinase -
  JG554_RS06530 (JG554_06530) gcvT 1362340..1363431 (+) 1092 WP_064208915.1 glycine cleavage system aminomethyltransferase GcvT -
  JG554_RS06535 (JG554_06535) gcvPA 1363449..1364801 (+) 1353 WP_046208177.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11770.87 Da        Isoelectric Point: 9.1200

>NTDB_id=528490 JG554_RS06505 WP_070039360.1 1360052..1360369(+) (comGC) [Staphylococcus sp. 11-B-312]
MNKLKQFFNKRAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQSTGCDAQIKMIESQVEAYTLKHNKKPQSIDELIADG
YIKENQKNCKSGATITINNGEVIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=528490 JG554_RS06505 WP_070039360.1 1360052..1360369(+) (comGC) [Staphylococcus sp. 11-B-312]
ATGAATAAACTAAAACAATTTTTTAATAAACGTGCTTTTACTTTAATTGAGATGCTCCTCGTACTTTTAATTATCAGTTT
ATTACTGATATTGATTATACCCAATATTGCAAAACAATCTTCACATATTCAAAGTACAGGTTGTGATGCCCAAATAAAAA
TGATTGAAAGTCAAGTTGAAGCATATACTTTAAAACATAATAAAAAACCACAATCTATAGATGAATTGATTGCGGATGGC
TATATTAAAGAAAACCAAAAAAATTGTAAATCAGGTGCTACTATCACAATTAACAATGGTGAAGTAATTGCAAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

77.895

90.476

0.705
  comGC Staphylococcus aureus MW2

77.895

90.476

0.705
  comGC/cglC Streptococcus mitis NCTC 12261

40.741

100

0.419
  comGC/cglC Streptococcus mitis SK321

47.191

84.762

0.4
  comGC/cglC Streptococcus pneumoniae R6

46.067

84.762

0.39
  comYC Streptococcus mutans UA159

46.067

84.762

0.39
  comGC/cglC Streptococcus pneumoniae TIGR4

46.067

84.762

0.39
  comGC/cglC Streptococcus pneumoniae Rx1

46.067

84.762

0.39
  comGC/cglC Streptococcus pneumoniae D39

46.067

84.762

0.39
  comYC Streptococcus mutans UA140

46.067

84.762

0.39
  comYC Streptococcus gordonii str. Challis substr. CH1

44.944

84.762

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

41.053

90.476

0.371