Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E1N14_RS02190 Genome accession   NZ_CP068230
Coordinates   458983..460248 (-) Length   421 a.a.
NCBI ID   WP_025012055.1    Uniprot ID   -
Organism   Shewanella algae strain CECT-5071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453983..465248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1N14_RS02165 (E1N14_002165) mutT 455996..456394 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  E1N14_RS02170 (E1N14_002170) yacG 456394..456606 (-) 213 WP_025012057.1 DNA gyrase inhibitor YacG -
  E1N14_RS02175 (E1N14_002175) zapD 456651..457391 (-) 741 WP_028779562.1 cell division protein ZapD -
  E1N14_RS02180 (E1N14_002180) coaE 457388..457999 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  E1N14_RS02185 (E1N14_002185) pilD 458000..458914 (-) 915 WP_062793712.1 prepilin peptidase Machinery gene
  E1N14_RS02190 (E1N14_002190) pilC 458983..460248 (-) 1266 WP_025012055.1 type II secretion system F family protein Machinery gene
  E1N14_RS02195 (E1N14_002195) pilB 460401..462107 (-) 1707 WP_025012054.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E1N14_RS02200 (E1N14_002200) - 462117..462530 (-) 414 WP_025012053.1 pilin -
  E1N14_RS02205 (E1N14_002205) nadC 463398..464258 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  E1N14_RS02210 (E1N14_002210) ampD 464417..464995 (+) 579 WP_051547208.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45665.76 Da        Isoelectric Point: 10.3084

>NTDB_id=528308 E1N14_RS02190 WP_025012055.1 458983..460248(-) (pilC) [Shewanella algae strain CECT-5071]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGNNRDGKLSSGELRGTSITEVKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRVLLGTVLADIQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFKGFGAELPAFTQLIVNISRGLQSTW
YLFLAGIVISAWLFVRAHRNSENFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=528308 E1N14_RS02190 WP_025012055.1 458983..460248(-) (pilC) [Shewanella algae strain CECT-5071]
ATGGCAACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAGAATAAAGGCGCCAAAGCCCAACCCAAGATCCACACCTT
TACCTGGAAGGGGAATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGCATCACCGAAGTAAAAACCC
TTCTTAAAAGCCAGGGGATTAATCCCAAGACGGTACGTAAAAAATCAGCGTCTATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCCGGGGTTCCCTTGGTAACAACTATTGAATTGAT
CGCCCGCGGCCATGAAAAAAACAAGGTGCGGGTACTACTCGGCACTGTATTGGCCGATATCCAAGCCGGCATCCCGCTGT
CCGATGCTCTTCGCCCCCATAGAGCATACTTCGATGATCTCTACGTCGACTTGGTTGCCGCCGGTGAACATTCAGGTTCC
TTGGATGCCGTATTTGATCGTATCGCCACCTACAGGGAAAAGTCAGAGGCCCTTAAGTCGAAAATTAAGAAAGCCATGTT
TTACCCTGCTGCAGTGGTGGTAGTTGCCATAGCCGTTACCGTGCTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TATTTAAAGGCTTCGGCGCCGAACTGCCTGCCTTTACCCAATTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACCTGG
TATCTATTTCTGGCTGGTATCGTTATCAGTGCCTGGCTCTTTGTCCGTGCTCATCGAAATTCAGAAAATTTCCGTAACCG
TATCGACGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCTTACATAAAGGTGCCATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCTGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAATTATGTTTAC
CGCAAGGCGCTATTAAATGTGCGTACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCTATT
CCCCGATATGCTAATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGACGGACTCTCCAGCTTGATAGAACCTATTATGATGGTAGTTATCGGCACC
ATAGTCGGCGGCCTAATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.388

94.774

0.525
  pilC Acinetobacter baylyi ADP1

49.633

97.15

0.482
  pilC Legionella pneumophila strain ERS1305867

48.762

95.962

0.468
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

47.264

95.487

0.451
  pilC Vibrio campbellii strain DS40M4

45.161

95.724

0.432
  pilG Neisseria meningitidis 44/76-A

42.029

98.337

0.413
  pilG Neisseria gonorrhoeae MS11

42.029

98.337

0.413