Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JKK46_RS20250 Genome accession   NZ_CP068229
Coordinates   4567238..4568503 (+) Length   421 a.a.
NCBI ID   WP_045283209.1    Uniprot ID   -
Organism   Shewanella algae strain 150735     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4562238..4573503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK46_RS20230 (JKK46_20235) ampD 4562443..4563021 (-) 579 WP_208128662.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JKK46_RS20235 (JKK46_20240) nadC 4563180..4564040 (+) 861 WP_096142088.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JKK46_RS20240 (JKK46_20245) - 4564909..4565349 (+) 441 WP_045283208.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JKK46_RS20245 (JKK46_20250) pilB 4565371..4567077 (+) 1707 WP_107352321.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKK46_RS20250 (JKK46_20255) pilC 4567238..4568503 (+) 1266 WP_045283209.1 type II secretion system F family protein Machinery gene
  JKK46_RS20255 (JKK46_20260) pilD 4568572..4569486 (+) 915 WP_208128663.1 A24 family peptidase Machinery gene
  JKK46_RS20260 (JKK46_20265) coaE 4569487..4570098 (+) 612 WP_028779563.1 dephospho-CoA kinase -
  JKK46_RS20265 (JKK46_20270) zapD 4570095..4570835 (+) 741 WP_028779562.1 cell division protein ZapD -
  JKK46_RS20270 (JKK46_20275) yacG 4570880..4571092 (+) 213 WP_025012057.1 DNA gyrase inhibitor YacG -
  JKK46_RS20275 (JKK46_20280) mutT 4571092..4571490 (+) 399 WP_145839803.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45633.77 Da        Isoelectric Point: 10.3088

>NTDB_id=528303 JKK46_RS20250 WP_045283209.1 4567238..4568503(+) (pilC) [Shewanella algae strain 150735]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGHNRDGKLSSGELRGTSITEVKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRTLLGTVLADIQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSGS
LDAVFDRIATYKEKSEALKSKIKKAMFYPAAVVIVAMAVTALLLVVVVPQFESIFAGFGAELPAFTQLIVSLSRGLQSTW
YLFLAGIVISVWLFVRAHRNSEHFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=528303 JKK46_RS20250 WP_045283209.1 4567238..4568503(+) (pilC) [Shewanella algae strain 150735]
ATGGCAACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAGAATAAAGGCGCCAAAGCCCAACCCAAGATCCACACCTT
TACCTGGAAGGGGCATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGTATCACCGAAGTAAAAACCC
TGCTTAAGAGCCAGGGGATCAATCCCAAGACGGTACGTAAAAAATCAGCTTCCATGTTTGGCGATAAAAAGATTAAGCCG
ATGGATATCGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCCGGCGTGCCACTGGTTACTTCCATCGAATTAAT
CGCTCGCGGCCATGAAAAAAATAAGGTTCGTACTCTACTCGGCACTGTGCTGGCCGATATCCAAGCCGGTATTCCACTCT
CCGATGCCCTCCGCCCTCACAGAGTCTATTTCGATGACCTCTATGTCGATTTGGTGGCTGCCGGCGAGCATTCAGGTTCT
TTGGACGCCGTATTCGATCGTATCGCCACTTACAAGGAAAAATCCGAAGCATTAAAATCCAAGATCAAAAAAGCCATGTT
CTATCCCGCTGCTGTGGTTATTGTCGCTATGGCGGTAACAGCTTTGCTATTAGTAGTCGTAGTCCCACAATTCGAAAGTA
TTTTCGCGGGTTTTGGCGCCGAACTGCCTGCTTTTACTCAACTCATTGTTAGTTTAAGTCGAGGTTTGCAAAGCACTTGG
TATCTATTTTTAGCCGGTATCGTTATCAGTGTCTGGCTGTTTGTCCGTGCTCATCGTAACTCAGAGCACTTCCGTAACCG
TATCGACGAAATGGTACTTAAGATCCCCGCAATAGGAGATATCCTCCATAAAGGTGCCATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGTGCCTCCGGTAATTATGTCTAC
CGCAAGGCGCTGTTGAATGTGCGCACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCTATT
CCCCGATATGCTAATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGACGGACTCTCCAGCTTGATAGAACCTATTATGATGGTAGTTATCGGCACC
ATAGTCGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.391

94.774

0.534
  pilC Acinetobacter baylyi ADP1

48.894

96.675

0.473
  pilC Legionella pneumophila strain ERS1305867

49.257

95.962

0.473
  pilC Acinetobacter baumannii D1279779

47.059

96.912

0.456
  pilC Vibrio cholerae strain A1552

46.883

95.249

0.447
  pilC Vibrio campbellii strain DS40M4

44.913

95.724

0.43
  pilG Neisseria meningitidis 44/76-A

42.271

98.337

0.416
  pilG Neisseria gonorrhoeae MS11

42.271

98.337

0.416