Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JKK46_RS20255 Genome accession   NZ_CP068229
Coordinates   4568572..4569486 (+) Length   304 a.a.
NCBI ID   WP_208128663.1    Uniprot ID   -
Organism   Shewanella algae strain 150735     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4563572..4574486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK46_RS20240 (JKK46_20245) - 4564909..4565349 (+) 441 WP_045283208.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JKK46_RS20245 (JKK46_20250) pilB 4565371..4567077 (+) 1707 WP_107352321.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKK46_RS20250 (JKK46_20255) pilC 4567238..4568503 (+) 1266 WP_045283209.1 type II secretion system F family protein Machinery gene
  JKK46_RS20255 (JKK46_20260) pilD 4568572..4569486 (+) 915 WP_208128663.1 A24 family peptidase Machinery gene
  JKK46_RS20260 (JKK46_20265) coaE 4569487..4570098 (+) 612 WP_028779563.1 dephospho-CoA kinase -
  JKK46_RS20265 (JKK46_20270) zapD 4570095..4570835 (+) 741 WP_028779562.1 cell division protein ZapD -
  JKK46_RS20270 (JKK46_20275) yacG 4570880..4571092 (+) 213 WP_025012057.1 DNA gyrase inhibitor YacG -
  JKK46_RS20275 (JKK46_20280) mutT 4571092..4571490 (+) 399 WP_145839803.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33917.19 Da        Isoelectric Point: 6.4647

>NTDB_id=528304 JKK46_RS20255 WP_208128663.1 4568572..4569486(+) (pilD) [Shewanella algae strain 150735]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLDEAKLNAPIDNYPAKY
NLILPKSACPNCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
FGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=528304 JKK46_RS20255 WP_208128663.1 4568572..4569486(+) (pilD) [Shewanella algae strain 150735]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCTGTAATAGG
CAGCTTTCTCAATGTGGTAATCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTAGATGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGATACTGCCGAAGTCTGCCTGCCCCAACTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCAATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCGGGCACCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGCCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGCGCCTGG
TTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)

Type IV leader peptidase family (Peptidase_A24)

(154-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

48.837

99.013

0.484
  pilD Acinetobacter nosocomialis M2

48.675

99.342

0.484
  pilD Vibrio cholerae strain A1552

50

96.053

0.48
  pilD Acinetobacter baumannii D1279779

48.344

99.342

0.48
  pilD Neisseria gonorrhoeae MS11

44.484

92.434

0.411