Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JKK44_RS02205 Genome accession   NZ_CP068228
Coordinates   461452..462717 (-) Length   421 a.a.
NCBI ID   WP_208166118.1    Uniprot ID   -
Organism   Shewanella algae strain G1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456452..467717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK44_RS02180 (JKK44_02180) mutT 458464..458862 (-) 399 WP_115389375.1 8-oxo-dGTP diphosphatase MutT -
  JKK44_RS02185 (JKK44_02185) yacG 458862..459074 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  JKK44_RS02190 (JKK44_02190) zapD 459119..459859 (-) 741 WP_208166116.1 cell division protein ZapD -
  JKK44_RS02195 (JKK44_02195) coaE 459856..460467 (-) 612 WP_208166117.1 dephospho-CoA kinase -
  JKK44_RS02200 (JKK44_02200) pilD 460468..461382 (-) 915 WP_144164451.1 prepilin peptidase Machinery gene
  JKK44_RS02205 (JKK44_02205) pilC 461452..462717 (-) 1266 WP_208166118.1 type II secretion system F family protein Machinery gene
  JKK44_RS02210 (JKK44_02210) pilB 462878..464584 (-) 1707 WP_208166119.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKK44_RS02215 (JKK44_02215) - 464605..465015 (-) 411 WP_208166120.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JKK44_RS02220 (JKK44_02220) nadC 465872..466732 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JKK44_RS02225 (JKK44_02225) ampD 466924..467469 (+) 546 WP_025012051.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45658.85 Da        Isoelectric Point: 10.3084

>NTDB_id=528261 JKK44_RS02205 WP_208166118.1 461452..462717(-) (pilC) [Shewanella algae strain G1]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGLNRDGKLSSGELRGASITEVKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRVLLGTVLADLQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSGS
LDAVFDRIATYKEKSEALKSKIKKAMFYPAAVVVVAIAVTALLLVVVVPQFEEVFRGFGAELPAFTQLIVSLSRGLQSTW
YLFLAGIVISVWLFVRAHRNSEHFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=528261 JKK44_RS02205 WP_208166118.1 461452..462717(-) (pilC) [Shewanella algae strain G1]
ATGGCAACCGCAACGGCGACAGCTAAAAACAATAAAGCCAAGAATAAAGGCGCCAAGGCCCAACCCAAGATCCACACCTT
TACCTGGAAAGGCCTCAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGCGGTGCCAGCATCACCGAAGTAAAAACCC
TGCTTAAAAGCCAGGGGATCAATCCCAAGACGGTACGTAAAAAATCAGCTTCCATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCCGGCGTACCGCTGGTCACTTCTATCGAGCTGAT
CGCTCGCGGCCATGAAAAAAACAAGGTGCGGGTGCTGCTTGGCACTGTATTGGCCGATCTCCAGGCTGGTATTCCACTCT
CCGATGCCCTCCGCCCGCACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCTGCCGGTGAGCATTCTGGTTCC
TTGGATGCCGTATTTGATCGTATCGCTACTTACAAGGAAAAGTCAGAGGCCCTTAAGTCAAAAATTAAAAAAGCCATGTT
CTACCCCGCCGCGGTGGTAGTCGTTGCCATAGCCGTTACCGCTTTATTATTGGTGGTTGTAGTACCTCAGTTTGAGGAGG
TGTTCAGAGGATTTGGTGCAGAACTGCCAGCTTTTACTCAGCTCATTGTCAGTTTAAGTCGAGGTTTGCAAAGCACTTGG
TATCTATTTTTAGCCGGTATCGTTATCAGCGTCTGGCTGTTTGTCCGTGCTCATCGTAACTCAGAACACTTTCGTAACCG
TATCGACGAAATGGTACTTAAGATTCCCGCAATAGGAGATATCCTCCATAAAGGTGCCATGGCCCGCTTCGCCCGCACTC
TGGCTACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCCGCCGCCGGCGCCTCCGGTAATTATGTTTAC
CGCAAAGCGCTGTTGAATGTGCGCACCGAAGTAATGGCCGGGATGCAGATGAACGTGGCTATGCGCACTACCAAGCTTTT
TCCCGACATGCTGATCCAAATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGATGGGCTCTCCAGCCTGATAGAACCTATTATGATGGTAGTTATCGGCACT
ATAGTCGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.642

94.774

0.537
  pilC Acinetobacter baylyi ADP1

49.386

96.675

0.477
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

46.633

95.249

0.444
  pilC Vibrio campbellii strain DS40M4

44.913

95.724

0.43
  pilG Neisseria meningitidis 44/76-A

42.512

98.337

0.418
  pilG Neisseria gonorrhoeae MS11

42.512

98.337

0.418