Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JKK44_RS02200 Genome accession   NZ_CP068228
Coordinates   460468..461382 (-) Length   304 a.a.
NCBI ID   WP_144164451.1    Uniprot ID   -
Organism   Shewanella algae strain G1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455468..466382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK44_RS02180 (JKK44_02180) mutT 458464..458862 (-) 399 WP_115389375.1 8-oxo-dGTP diphosphatase MutT -
  JKK44_RS02185 (JKK44_02185) yacG 458862..459074 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  JKK44_RS02190 (JKK44_02190) zapD 459119..459859 (-) 741 WP_208166116.1 cell division protein ZapD -
  JKK44_RS02195 (JKK44_02195) coaE 459856..460467 (-) 612 WP_208166117.1 dephospho-CoA kinase -
  JKK44_RS02200 (JKK44_02200) pilD 460468..461382 (-) 915 WP_144164451.1 prepilin peptidase Machinery gene
  JKK44_RS02205 (JKK44_02205) pilC 461452..462717 (-) 1266 WP_208166118.1 type II secretion system F family protein Machinery gene
  JKK44_RS02210 (JKK44_02210) pilB 462878..464584 (-) 1707 WP_208166119.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKK44_RS02215 (JKK44_02215) - 464605..465015 (-) 411 WP_208166120.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33839.21 Da        Isoelectric Point: 7.2147

>NTDB_id=528260 JKK44_RS02200 WP_144164451.1 460468..461382(-) (pilD) [Shewanella algae strain G1]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=528260 JKK44_RS02200 WP_144164451.1 460468..461382(-) (pilD) [Shewanella algae strain G1]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCTGTAATAGG
CAGCTTTCTCAATGTGGTAATCCACCGCCTGCCAGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTAGGTGAAGCCAAGCTTAATGCACCGATAGATAACTATCCGGCCAAATAC
AATCTGATACTTCCGAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCAAGATACCCAATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCAGATCAGATTACTCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCAGGCACCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATCTAAGTCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGAC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

49.169

99.013

0.487
  pilD Vibrio cholerae strain A1552

50

96.053

0.48
  pilD Acinetobacter nosocomialis M2

48.013

99.342

0.477
  pilD Acinetobacter baumannii D1279779

47.682

99.342

0.474
  pilD Neisseria gonorrhoeae MS11

45.196

92.434

0.418