Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6I51_RS10200 Genome accession   NZ_CP068187
Coordinates   1950597..1952675 (-) Length   692 a.a.
NCBI ID   WP_201701767.1    Uniprot ID   A0AA43BI69
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945597..1957675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS10185 (I6I51_10190) - 1948063..1948902 (-) 840 WP_094148566.1 hypothetical protein -
  I6I51_RS10190 (I6I51_10195) aroB 1948910..1949995 (-) 1086 WP_125280900.1 3-dehydroquinate synthase -
  I6I51_RS10195 (I6I51_10200) aroK 1950026..1950559 (-) 534 WP_201701765.1 shikimate kinase AroK -
  I6I51_RS10200 (I6I51_10205) pilQ 1950597..1952675 (-) 2079 WP_201701767.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I51_RS10205 (I6I51_10210) pilP 1952695..1953222 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  I6I51_RS10210 (I6I51_10215) pilO 1953222..1953944 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I51_RS10215 (I6I51_10220) pilN 1953941..1954597 (-) 657 WP_168158668.1 PilN domain-containing protein Machinery gene
  I6I51_RS10220 (I6I51_10225) pilM 1954597..1955655 (-) 1059 WP_201701769.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75037.07 Da        Isoelectric Point: 5.0491

>NTDB_id=527898 I6I51_RS10200 WP_201701767.1 1950597..1952675(-) (pilQ) [Acinetobacter johnsonii strain FDAARGOS_1094]
MNNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSVNPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADILKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQ
IPYQTYSAESGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGTLTSAGYLINTNELETNVLVDDGETVVLGGIFD
DIKQNQYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=527898 I6I51_RS10200 WP_201701767.1 1950597..1952675(-) (pilQ) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGAATAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGCATTGCGGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGTGAACCCAGCGCTAGCAACACCTGTTGCTGCAGCGCGTTCAGAGCAAGGTATTTCA
AATATTGGATTCCAACGTGGTTCAGACGGCGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGTAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCACGCCGTCTCAATGTGA
ATGATTTCGCCACGCCTGTATCGACCATTGATGCACAAAACGATGGTAGTAATGGCCTGATCACAATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCTGAAGATAAGCTCACGATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTGGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCGTGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATTGC
ACCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATATTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTTG
CAGTGAAACAGGTGATGGTTGAAGCCCGTATAGTCACAGCACAAACAGATTTCTCTCGCGAATTGGGAATTCGTTGGAGT
GCGCAAAAACTCAATAACAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTAGGAGTAGATTTGGCAACGGG
TACGGCGGGAACGTTTAACTTTGGTTTGTTAAAAATCTCAGACTATATGTTGAATCTTGAGTTAACTGCGCTACAAGCAG
ATGGTCATGGTGAAGTTTTGTCGGCGCCTAAAGTACTTACTGGTGATAAACAGAAAGCCTATATTTTACGTGGAGATCAA
ATTCCTTACCAAACTTATAGTGCCGAGTCAGGGACAACAACCAGTTTTGTTGATGCGAATTTAAAGTTGGAAGTCACGCC
AAGTATTACACCTGATGGTCGCGTACAAATGTCGCTAAAAATTGAAAAAGATACAGTTGGTACACTAACATCAGCAGGGT
ATTTAATTAATACAAATGAACTTGAAACCAATGTTTTGGTGGATGATGGCGAGACGGTTGTATTGGGTGGTATTTTTGAT
GACATTAAGCAAAATCAATATGAGAAAGTTCCCTTTTTTGGGGATTTGCCTGTAGTGGGTGCTTTATTTAAAAATAACAC
CAAATCTAGTGCGCAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Secretin and TonB N terminus short domain (STN)

(305-348)

Bacterial type II and III secretion system protein (Secretin)

(530-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

66.066

100

0.689
  pilQ Acinetobacter baumannii strain A118

65.928

100

0.688
  comQ Acinetobacter baylyi ADP1

63.15

100

0.649
  pilQ Pseudomonas aeruginosa PAK

39.768

99.566

0.396
  pilQ Legionella pneumophila strain Lp02

37.736

99.566

0.376
  pilQ Legionella pneumophila strain ERS1305867

37.775

98.699

0.373