Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6I51_RS10205 Genome accession   NZ_CP068187
Coordinates   1952695..1953222 (-) Length   175 a.a.
NCBI ID   WP_004691496.1    Uniprot ID   A0A2W5RPS2
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947695..1958222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS10185 (I6I51_10190) - 1948063..1948902 (-) 840 WP_094148566.1 hypothetical protein -
  I6I51_RS10190 (I6I51_10195) aroB 1948910..1949995 (-) 1086 WP_125280900.1 3-dehydroquinate synthase -
  I6I51_RS10195 (I6I51_10200) aroK 1950026..1950559 (-) 534 WP_201701765.1 shikimate kinase AroK -
  I6I51_RS10200 (I6I51_10205) pilQ 1950597..1952675 (-) 2079 WP_201701767.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I51_RS10205 (I6I51_10210) pilP 1952695..1953222 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  I6I51_RS10210 (I6I51_10215) pilO 1953222..1953944 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I51_RS10215 (I6I51_10220) pilN 1953941..1954597 (-) 657 WP_168158668.1 PilN domain-containing protein Machinery gene
  I6I51_RS10220 (I6I51_10225) pilM 1954597..1955655 (-) 1059 WP_201701769.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19385.59 Da        Isoelectric Point: 7.1331

>NTDB_id=527899 I6I51_RS10205 WP_004691496.1 1952695..1953222(-) (pilP) [Acinetobacter johnsonii strain FDAARGOS_1094]
MKYQNLMLSLCVGLFLIGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=527899 I6I51_RS10205 WP_004691496.1 1952695..1953222(-) (pilP) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTTGGACTATTTCTTATCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAACCTGCGCCAGATTTTCCACCTGTACCGACTTTTA
ATTATGCCGCACATCAATTAAAGAGTCCGTTTATGCCAAGCTCATTGGCAGCTGAATTGAAAATTATGGCTGGAAAGCGT
GTTTATCCAAACTTATCTCGCCAATTACAACCTTTGGAAAGTTATGCGATTGAATCGCTTAACATGAAAGGTAGTATGCG
CGGGCAAAATGGACAAATTTTGGCGTTGATTCAAACACCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCCACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2W5RPS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.766
  comL Acinetobacter baylyi ADP1

71.429

100

0.714