Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6I51_RS10215 Genome accession   NZ_CP068187
Coordinates   1953941..1954597 (-) Length   218 a.a.
NCBI ID   WP_168158668.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1948941..1959597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS10195 (I6I51_10200) aroK 1950026..1950559 (-) 534 WP_201701765.1 shikimate kinase AroK -
  I6I51_RS10200 (I6I51_10205) pilQ 1950597..1952675 (-) 2079 WP_201701767.1 type IV pilus secretin PilQ family protein Machinery gene
  I6I51_RS10205 (I6I51_10210) pilP 1952695..1953222 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  I6I51_RS10210 (I6I51_10215) pilO 1953222..1953944 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I51_RS10215 (I6I51_10220) pilN 1953941..1954597 (-) 657 WP_168158668.1 PilN domain-containing protein Machinery gene
  I6I51_RS10220 (I6I51_10225) pilM 1954597..1955655 (-) 1059 WP_201701769.1 pilus assembly protein PilM Machinery gene
  I6I51_RS10225 (I6I51_10230) ponA 1955821..1958349 (+) 2529 WP_201701771.1 penicillin-binding protein PBP1a -
  I6I51_RS10230 (I6I51_10235) - 1958381..1959187 (-) 807 WP_201701773.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24240.68 Da        Isoelectric Point: 5.1439

>NTDB_id=527901 I6I51_RS10215 WP_168158668.1 1953941..1954597(-) (pilN) [Acinetobacter johnsonii strain FDAARGOS_1094]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRIEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=527901 I6I51_RS10215 WP_168158668.1 1953941..1954597(-) (pilN) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAGGAACAGGCCA
ATCAGTTGGTGGTGAGTACAAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGGCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGCTTGCAAGGTCAACGCCCTGTGGCTGTACGTTTGGTCGATGAAATGGTACG
TGTTACACCGAGTAATATGTACATTACTAAGTTTGTGCGTACAGGTGATAAATTTACCATTGAAGGTAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGTAATCTCGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTATTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.378

95.872

0.665
  comN Acinetobacter baylyi ADP1

73.096

90.367

0.661