Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6I53_RS03400 Genome accession   NZ_CP068176
Coordinates   602458..603684 (+) Length   408 a.a.
NCBI ID   WP_004994255.1    Uniprot ID   A0A2N6VGW1
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 597458..608684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS03365 (I6I53_03370) rimP 598006..598530 (-) 525 WP_004991666.1 ribosome maturation factor RimP -
  I6I53_RS03385 (I6I53_03390) secG 599216..599545 (-) 330 WP_004991669.1 preprotein translocase subunit SecG -
  I6I53_RS03390 (I6I53_03395) tpiA 599555..600352 (-) 798 WP_004994252.1 triose-phosphate isomerase -
  I6I53_RS03395 (I6I53_03400) pilB 600706..602427 (+) 1722 WP_004994254.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6I53_RS03400 (I6I53_03405) pilC 602458..603684 (+) 1227 WP_004994255.1 type II secretion system F family protein Machinery gene
  I6I53_RS16775 (I6I53_03410) pilD 603684..604544 (+) 861 WP_004994264.1 A24 family peptidase Machinery gene
  I6I53_RS03410 (I6I53_03415) coaE 604547..605140 (+) 594 WP_004994266.1 dephospho-CoA kinase -
  I6I53_RS03415 (I6I53_03420) - 605122..606045 (-) 924 WP_004994268.1 DMT family transporter -
  I6I53_RS03420 (I6I53_03425) rlmB 606086..606835 (-) 750 WP_004994270.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6I53_RS03425 (I6I53_03430) - 606955..607281 (-) 327 WP_004991681.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45144.77 Da        Isoelectric Point: 9.9736

>NTDB_id=527808 I6I53_RS03400 WP_004994255.1 602458..603684(+) (pilC) [Acinetobacter ursingii strain FDAARGOS_1096]
MAIQKTQMMPTFAYEGVDRKGGKIVGELSARNIALAKVTLRKQGITIKTIRQKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLILSFEIVAEGLENPAMREVVINLKREVEGGSTFADALRKYPQYFDSLFCSLVESGEISGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQSYWFIMIIGIGVVIA
VFLETKKRSKKFRNALDRMALKLPIFGDLIYKSIIARYSRTLATTFAAGVPLIDALKSTAGATNNVIYEDAVMKIREDVA
TGQQLQFAMKTSNLFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=527808 I6I53_RS03400 WP_004994255.1 602458..603684(+) (pilC) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGGCAATTCAAAAAACACAAATGATGCCAACTTTTGCTTATGAAGGGGTTGATCGAAAGGGAGGAAAAATTGTAGGAGA
ATTATCCGCAAGAAATATAGCCCTCGCAAAAGTAACTTTGCGTAAGCAAGGTATCACCATTAAGACAATTCGCCAAAAAC
GTAAGAATATTTTAGAAGGGCTATTTAAGAAAAAAGTCACTACATTAGATATTACGATTTTCACGCGACAACTTGCGACC
ATGATGAAAGCAGGTGTTCCTTTAATTCTAAGTTTTGAAATTGTTGCTGAAGGCTTAGAAAACCCAGCGATGCGAGAAGT
AGTAATTAACCTAAAACGTGAAGTTGAAGGAGGAAGTACTTTTGCAGATGCTTTACGCAAATATCCCCAATATTTTGATT
CATTATTTTGTTCCTTAGTGGAATCTGGTGAAATATCTGGTGCGCTTGAAACCATGCTAGATCGTGTCGCGATCTACAAG
GAAAAAAGTGAGCTTTTAAAACAAAAAATCAAAAAAGCCATGAAATACCCGATTACTGTCATTGTTGTTGCAGTGATTGT
CACGATTATTTTGATGGTAAAAGTCGTCCCCGTCTTTCAGGATTTATTTAGCTCATTTGGCGCAGAACTTCCTGCTTTTA
CCCAGATGGTGGTGAATATGTCAAAATGGATGCAATCCTACTGGTTCATTATGATTATAGGAATTGGTGTCGTCATTGCT
GTATTTTTAGAAACAAAGAAACGAAGTAAAAAATTTCGTAACGCCTTAGATAGAATGGCATTAAAACTGCCAATTTTTGG
TGATTTAATCTATAAATCAATTATTGCACGTTATAGCCGCACCCTAGCAACGACTTTTGCCGCCGGTGTACCTTTAATTG
ATGCTCTAAAATCAACCGCTGGTGCCACCAATAATGTGATTTATGAAGATGCTGTTATGAAGATTCGTGAAGATGTTGCC
ACTGGACAACAACTACAATTTGCCATGAAAACATCCAACTTATTTCCTTCAATGGCTGTTCAAATGGTGGCTATTGGTGA
AGAGTCTGGTGCATTGGATGCCATGCTCGACAAAGTTGCCACGCATTATGAAAATGAAGTCGACAATGCTGTAGACGGAC
TAACCTCCATGATGGAACCTTTGATCATGGCAATTCTCGGCGTACTAGTCGGCGGTCTGGTCATCGCCATGTATCTTCCA
ATTTTCCAGATGGGTTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6VGW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.235

100

0.882
  pilC Acinetobacter baylyi ADP1

81.373

100

0.814
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.265

0.608
  pilC Legionella pneumophila strain ERS1305867

54.02

97.549

0.527
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

41.912

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.648

98.284

0.4