Detailed information NTG0527839

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6I53_RS16775
• Genome accession: NZ_CP068176
• Coordinates: 603684..604544 (+)
• Length: 286 a.a.
• NCBI ID: WP_004994264.1
• Uniprot ID: A0A7T9Z7L0
• Organism: Acinetobacter ursingii strain FDAARGOS_1096
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 598684..609544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I53_RS03385 (I6I53_03390)	secG	599216..599545 (-)	330	WP_004991669.1	preprotein translocase subunit SecG	-
I6I53_RS03390 (I6I53_03395)	tpiA	599555..600352 (-)	798	WP_004994252.1	triose-phosphate isomerase	-
I6I53_RS03395 (I6I53_03400)	pilB	600706..602427 (+)	1722	WP_004994254.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6I53_RS03400 (I6I53_03405)	pilC	602458..603684 (+)	1227	WP_004994255.1	type II secretion system F family protein	Machinery gene
I6I53_RS16775 (I6I53_03410)	pilD	603684..604544 (+)	861	WP_004994264.1	A24 family peptidase	Machinery gene
I6I53_RS03410 (I6I53_03415)	coaE	604547..605140 (+)	594	WP_004994266.1	dephospho-CoA kinase	-
I6I53_RS03415 (I6I53_03420)	-	605122..606045 (-)	924	WP_004994268.1	DMT family transporter	-
I6I53_RS03420 (I6I53_03425)	rlmB	606086..606835 (-)	750	WP_004994270.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6I53_RS03425 (I6I53_03430)	-	606955..607281 (-)	327	WP_004991681.1	pyrimidine/purine nucleoside phosphorylase	-
I6I53_RS03430 (I6I53_03435)	recN	607789..609450 (+)	1662	WP_004994272.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32131.53 Da
• Isoelectric Point: 7.8327

>NTDB_id=527839 I6I53_RS16775 WP_004994264.1 603684..604544(+) (pilD) [Acinetobacter ursingii strain FDAARGOS_1096]
MSEILNYFIQTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQDWHTECQMLLHPDQAIIDQDKLTLSSPPSTCPKCHSR
IRWYQNIPLLSWLFLKGRCSHCQNPISIRYPLVELLTMLCSLMIVAVFGPSFQMLFGLVLTWALIALTFIDFDTQLLPDR
FTLPLAALGLGVNSYSLYVSPTASIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPIAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=527839 I6I53_RS16775 WP_004994264.1 603684..604544(+) (pilD) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGTCCGAAATTCTTAATTATTTTATCCAAACCCCAACTGCGCTTTATCTTGCAGTTGGGATTTTTAGCTTGTGCATTGG
TAGTTTTTTAAATGTTGTGATTTACCGCACGCCAAAAATGATGGAACAGGACTGGCACACTGAGTGTCAAATGTTATTAC
ATCCTGATCAAGCGATCATTGATCAAGATAAACTGACATTAAGTTCACCACCTTCAACCTGCCCCAAATGCCATAGCCGT
ATTCGTTGGTATCAAAATATTCCATTGCTCAGTTGGCTATTTTTAAAAGGTAGATGTAGCCATTGTCAAAATCCGATTAG
CATCCGTTATCCTTTGGTTGAACTGCTCACGATGCTATGTTCACTGATGATCGTGGCTGTCTTTGGCCCGAGCTTTCAAA
TGCTGTTTGGTCTGGTTTTAACTTGGGCGCTTATTGCCCTCACGTTTATTGATTTTGATACTCAACTGTTGCCCGATCGT
TTTACTCTGCCGCTAGCAGCATTAGGTCTAGGGGTTAATAGCTATAGTCTTTATGTCTCACCAACCGCCTCGATTTGGGG
CTATCTGATTGGTTTTTTATGCCTGTGGATTGTCTATTATTTATTTAAAATCATCACAGGTAAAGAAGGGATGGGCTATG
GCGATTTTAAGTTACTTGCTGCTCTCGGCGCATGGATGGGACCTTTGATGCTTCCACTGATTGTGCTACTTTCTTCACTG
GTCGGTGCGATTATAGGGATTATTTTACTCAAAATTCGTAAAGAAAATCAGCCAATTGCCTTTGGCCCTTATATCGCCAT
TGCTGGATGGATCGCCTTTTTATGGGGTGAGCAAATTATGAAAGTTTATCTGGGAGGCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80.42	100	0.804
pilD	Acinetobacter baumannii D1279779	79.371	100	0.794
pilD	Vibrio cholerae strain A1552	54.307	93.357	0.507
pilD	Vibrio campbellii strain DS40M4	50.175	99.65	0.5
pilD	Neisseria gonorrhoeae MS11	43.956	95.455	0.42