Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I79_RS08735 Genome accession   NZ_CP068126
Coordinates   1644134..1644598 (+) Length   154 a.a.
NCBI ID   WP_201691547.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1122     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1639134..1649598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I79_RS08710 (I6I79_08710) - 1639972..1641138 (+) 1167 WP_002337526.1 extracellular solute-binding protein -
  I6I79_RS08715 (I6I79_08715) - 1641135..1642049 (+) 915 WP_002337525.1 ABC transporter permease -
  I6I79_RS08720 (I6I79_08720) - 1642086..1642580 (+) 495 WP_002337524.1 hypothetical protein -
  I6I79_RS08725 (I6I79_08725) - 1642561..1643556 (+) 996 WP_002337523.1 CehA/McbA family metallohydrolase -
  I6I79_RS08735 (I6I79_08735) ssb 1644134..1644598 (+) 465 WP_201691547.1 single-stranded DNA-binding protein Machinery gene
  I6I79_RS08740 (I6I79_08740) - 1644707..1645186 (+) 480 WP_142972146.1 transcriptional regulator -
  I6I79_RS08745 (I6I79_08745) - 1645418..1645621 (+) 204 WP_081117095.1 hypothetical protein -
  I6I79_RS08750 (I6I79_08750) - 1646020..1646699 (+) 680 WP_201691549.1 IS6-like element IS1216 family transposase -
  I6I79_RS08755 (I6I79_08755) - 1646750..1647220 (+) 471 Protein_1613 NIL domain-containing protein -
  I6I79_RS08760 (I6I79_08760) - 1647213..1647899 (+) 687 WP_005227919.1 methionine ABC transporter permease -
  I6I79_RS08765 (I6I79_08765) - 1647944..1648798 (+) 855 WP_010749087.1 MetQ/NlpA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17165.23 Da        Isoelectric Point: 4.7815

>NTDB_id=527281 I6I79_RS08735 WP_201691547.1 1644134..1644598(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_1122]
MINNVVLVGRLTRDPELKFTPNGAAVVTFTLAVNRNFTNQSGQREADFINCVIWRKPAETLATYAKKGTLLGVTGRIQTR
FYDNPQGQRVYVTEVVAETFQLMESKDVSEQRANESNETAEKNKPTPPPLPKQETDPFAQSSSAIDLSDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=527281 I6I79_RS08735 WP_201691547.1 1644134..1644598(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_1122]
ATGATCAATAACGTCGTATTAGTAGGAAGATTAACGAGAGATCCAGAATTAAAATTTACACCGAACGGTGCTGCAGTGGT
CACGTTCACTTTGGCCGTGAATCGAAATTTTACCAATCAAAGCGGTCAAAGAGAAGCTGACTTCATAAATTGTGTCATTT
GGCGTAAACCAGCCGAAACCCTTGCCACTTACGCAAAGAAAGGGACGCTTCTCGGCGTGACTGGACGTATTCAGACAAGA
TTTTACGATAACCCACAAGGACAGCGAGTGTACGTCACAGAAGTCGTGGCAGAGACGTTTCAATTAATGGAATCAAAAGA
TGTGTCTGAGCAGCGTGCGAATGAATCCAACGAAACAGCTGAAAAAAACAAACCAACACCGCCGCCGCTACCAAAACAAG
AAACGGATCCATTTGCACAAAGCAGTTCGGCCATCGATTTATCAGATGATGATTTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.597
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

68.831

0.409
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

77.922

0.39
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.305

76.623

0.37
  ssbB/cilA Streptococcus mitis NCTC 12261

47.458

76.623

0.364
  ssbB/cilA Streptococcus pneumoniae Rx1

47.458

76.623

0.364
  ssbB/cilA Streptococcus pneumoniae D39

47.458

76.623

0.364
  ssbB/cilA Streptococcus pneumoniae R6

47.458

76.623

0.364
  ssbB/cilA Streptococcus mitis SK321

47.458

76.623

0.364