Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6I79_RS05160 Genome accession   NZ_CP068126
Coordinates   908181..909419 (+) Length   412 a.a.
NCBI ID   WP_201690836.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1122     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 903181..914419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I79_RS05140 (I6I79_05140) yfmF 903414..904682 (+) 1269 WP_201690834.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  I6I79_RS05145 (I6I79_05145) yfmH 904675..905973 (+) 1299 WP_005232896.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I6I79_RS05150 (I6I79_05150) - 906437..907339 (+) 903 WP_086294312.1 helix-turn-helix domain-containing protein -
  I6I79_RS05155 (I6I79_05155) pgsA 907472..908053 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I79_RS05160 (I6I79_05160) cinA 908181..909419 (+) 1239 WP_201690836.1 competence/damage-inducible protein A Machinery gene
  I6I79_RS05165 (I6I79_05165) recA 909522..910565 (+) 1044 WP_201690839.1 recombinase RecA Machinery gene
  I6I79_RS05170 (I6I79_05170) rny 910809..912383 (+) 1575 WP_005232891.1 ribonuclease Y -
  I6I79_RS05175 (I6I79_05175) treR 912682..913398 (-) 717 WP_005226457.1 trehalose operon repressor -
  I6I79_RS05180 (I6I79_05180) pgmB 913453..914103 (-) 651 WP_005232889.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44854.00 Da        Isoelectric Point: 4.6005

>NTDB_id=527277 I6I79_RS05160 WP_201690836.1 908181..909419(+) (cinA) [Enterococcus casseliflavus strain FDAARGOS_1122]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPNELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVELLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAAIKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRTYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=527277 I6I79_RS05160 WP_201690836.1 908181..909419(+) (cinA) [Enterococcus casseliflavus strain FDAARGOS_1122]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAAGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTGTGTGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGGCAGACTCTCGTTTTTAAGGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCGGGACCACCAAATGAACTACAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAAGTCTTGCTGTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCGTTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCCCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACCGCAGATGAGGCGCAAGGGATCAAACAATTGGATGCATTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCACTGGCAGAAACAGTCGTCGAGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAATAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAATGTGCAGAAGCAATGGCCGTATATGCCCGCAAACAAGCCGAGAC
TGATTATGCGGTGGCATTTACTGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCACCTATATTCGGCATAGTGCCGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.118

100

0.515
  cinA Streptococcus mitis SK321

49.882

100

0.512
  cinA Streptococcus pneumoniae Rx1

49.882

100

0.512
  cinA Streptococcus pneumoniae R6

49.882

100

0.512
  cinA Streptococcus pneumoniae D39

49.882

100

0.512
  cinA Streptococcus mitis NCTC 12261

49.409

100

0.507
  cinA Streptococcus mutans UA159

49.76

100

0.502
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

42.754

100

0.43