Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I79_RS05165 Genome accession   NZ_CP068126
Coordinates   909522..910565 (+) Length   347 a.a.
NCBI ID   WP_201690839.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 904522..915565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I79_RS05145 (I6I79_05145) yfmH 904675..905973 (+) 1299 WP_005232896.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I6I79_RS05150 (I6I79_05150) - 906437..907339 (+) 903 WP_086294312.1 helix-turn-helix domain-containing protein -
  I6I79_RS05155 (I6I79_05155) pgsA 907472..908053 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I79_RS05160 (I6I79_05160) cinA 908181..909419 (+) 1239 WP_201690836.1 competence/damage-inducible protein A Machinery gene
  I6I79_RS05165 (I6I79_05165) recA 909522..910565 (+) 1044 WP_201690839.1 recombinase RecA Machinery gene
  I6I79_RS05170 (I6I79_05170) rny 910809..912383 (+) 1575 WP_005232891.1 ribonuclease Y -
  I6I79_RS05175 (I6I79_05175) treR 912682..913398 (-) 717 WP_005226457.1 trehalose operon repressor -
  I6I79_RS05180 (I6I79_05180) pgmB 913453..914103 (-) 651 WP_005232889.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37413.64 Da        Isoelectric Point: 4.8857

>NTDB_id=527278 I6I79_RS05165 WP_201690839.1 909522..910565(+) (recA) [Enterococcus casseliflavus strain FDAARGOS_1122]
MADDRKAALDAALKKIEKNYGKGAIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFKVAEVDMMYGLGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGRENAKNYMREHQEMMLEVSA
RVRDAYGIGTGETVTLEEAQEELPLDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=527278 I6I79_RS05165 WP_201690839.1 909522..910565(+) (recA) [Enterococcus casseliflavus strain FDAARGOS_1122]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTAAAGAAGATTGAAAAGAACTATGGTAAAGGTGCCATCATGAA
GCTTGGCGAAAAAGTTGATCAACAAATTTCAACGATCCCAAGTGGTTCATTGGCCTTGGATGTTGCATTAGGTGTAGGTG
GTTACCCACGAGGACGGATCGTAGAAGTTTACGGCCCAGAAAGTTCTGGTAAAACGACAGTTGCTTTACATGCCATTGCG
GAAGTCCAAAAAAATGGCGGAACAGCAGCATTTATCGATGCCGAACATGCGTTAGATCCTCAATATGCGCAAAAATTAGG
TGTAAATATCGATGATCTTTTGTTATCACAACCAGATACAGGGGAACAAGGATTAGAGATCGCTGACGCCTTAGTTTCAA
GTGGTGCGGTTGATATCGTGGTCATTGACTCGGTAGCAGCTTTGGTCCCACGGGCGGAGATCGACGGTGAAATGGGTGAT
ACCCACGTTGGTTTGCAAGCACGTTTGATGTCACAAGCATTACGGAAACTTTCTGGTTCCATCAACAAAACGAAAACGAT
CGCGATCTTTATCAACCAAATTCGGGAAAAAGTTGGGATCATGTTCGGGAATCCAGAAACGACACCTGGTGGACGTGCGT
TGAAATTCTATTCAACCATCCGTTTGGAAGTACGTCGTGCTGAGCAATTGAAATCCGGTACAGATATCATCGGGAACCGC
ACGAAGATCAAAGTAGTCAAAAACAAAGTAGCGCCACCATTTAAAGTAGCGGAAGTCGACATGATGTATGGTCTAGGTAT
TTCACAAGAAGGTGAATTATTGGATATGGCCGTGGAACAAGACATCGTCGATAAAAGCGGTGCGTGGTATGCCTATAAAG
GGGATCGTATCGGTCAAGGTCGTGAAAACGCCAAAAACTACATGCGTGAACACCAAGAAATGATGCTAGAAGTTTCTGCT
CGCGTCCGCGATGCTTACGGGATTGGAACAGGAGAGACCGTAACCCTTGAGGAAGCGCAAGAAGAATTACCATTAGACGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.595

93.948

0.767
  recA Bacillus subtilis subsp. subtilis str. 168

77.846

93.66

0.729
  recA Streptococcus pneumoniae D39

65

100

0.674
  recA Streptococcus pneumoniae R6

65

100

0.674
  recA Streptococcus pneumoniae TIGR4

65

100

0.674
  recA Streptococcus pneumoniae Rx1

65

100

0.674
  recA Streptococcus mutans UA159

68.769

95.965

0.66
  recA Streptococcus mitis NCTC 12261

65.706

100

0.657
  recA Streptococcus pyogenes NZ131

68.58

95.389

0.654
  recA Streptococcus mitis SK321

67.868

95.965

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.389

94.813

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

94.813

0.597
  recA Ralstonia pseudosolanacearum GMI1000

62.691

94.236

0.591
  recA Neisseria gonorrhoeae strain FA1090

62.006

94.813

0.588
  recA Neisseria gonorrhoeae MS11

62.006

94.813

0.588
  recA Neisseria gonorrhoeae MS11

62.006

94.813

0.588
  recA Acinetobacter baumannii D1279779

58.772

98.559

0.579
  recA Acinetobacter baylyi ADP1

58.43

99.135

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.79

94.813

0.576
  recA Pseudomonas stutzeri DSM 10701

61.3

93.084

0.571
  recA Vibrio cholerae strain A1552

59.877

93.372

0.559
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.877

93.372

0.559
  recA Helicobacter pylori 26695

58.896

93.948

0.553
  recA Helicobacter pylori strain NCTC11637

58.896

93.948

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

93.66

0.553
  recA Glaesserella parasuis strain SC1401

59.627

92.795

0.553