Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6I87_RS01665 Genome accession   NZ_CP068109
Coordinates   355113..356336 (+) Length   407 a.a.
NCBI ID   WP_201665472.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350113..361336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS01635 (I6I87_01635) rimP 350629..351138 (-) 510 WP_201665466.1 ribosome maturation factor RimP -
  I6I87_RS01650 (I6I87_01650) secG 351704..352024 (-) 321 WP_036594931.1 preprotein translocase subunit SecG -
  I6I87_RS01655 (I6I87_01655) tpiA 352116..352925 (-) 810 WP_201665468.1 triose-phosphate isomerase -
  I6I87_RS01660 (I6I87_01660) pilB 353350..355056 (+) 1707 WP_201665470.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6I87_RS01665 (I6I87_01665) pilC 355113..356336 (+) 1224 WP_201665472.1 type II secretion system F family protein Machinery gene
  I6I87_RS01670 (I6I87_01670) pilD 356342..357217 (+) 876 WP_201665474.1 prepilin peptidase Machinery gene
  I6I87_RS01675 (I6I87_01675) coaE 357214..357870 (+) 657 WP_227715556.1 dephospho-CoA kinase -
  I6I87_RS01680 (I6I87_01680) - 357928..359334 (-) 1407 WP_201665476.1 nicotinate phosphoribosyltransferase -
  I6I87_RS01685 (I6I87_01685) - 359404..360507 (-) 1104 WP_201665478.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44823.78 Da        Isoelectric Point: 9.5933

>NTDB_id=527159 I6I87_RS01665 WP_201665472.1 355113..356336(+) (pilC) [Moraxella osloensis strain FDAARGOS_1130]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIQVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVSMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=527159 I6I87_RS01665 WP_201665472.1 355113..356336(+) (pilC) [Moraxella osloensis strain FDAARGOS_1130]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAGAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAACTACGCAAGCAAGGCATCCAAGTCAAGACGATTAAGAAAAAAC
CTAAGCCCATTTTTCAAATGAAAAAAAGCATCAAGGCAATCGATATTGCTATCTTTGTGCGTCAGTTGGCTACGATGATG
AAAGCAGGTGTACCCCTTACACAGTCGTTTGAAATCGTTGCAGATGCGCTCGATAACCCCTCGATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGAAGCACCTTTGCTGCAGCGCTGCGCAAACATCCCAGATATTTTGATGACCTAT
TTTGTTCATTGGTAGAGGCAGGTGAGCAGTCGGGCGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGTTGGTCAAAGTAGTACCGGTGTTTGCTGACTTATTCCATTCATTTGGCGCAGAATTACCTGCGTTTACCCAAA
TGGTGGTCAGTATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTCGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAGCCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTGCCAATCTTTGGCAACAT
TGCTTATCAAGCGGTAGTTGCCCGTTTTTCCCGCACTTTATCTACCACTTTTGCAGCAGGTGTGCCGCTGATTGATGCGT
TGGATTCAACCGCTGGGGCAACCAACAATGTGGTGTTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACCGGT
CAACAATTGCAGTTTTCGATGCGTTCTACCAATCTTTTTCCGAGTATGGCTATTCAAATGGTCGGTATTGGTGAGGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCGGTTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATCTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.343

100

0.705
  pilC Acinetobacter baylyi ADP1

68.873

100

0.69
  pilC Pseudomonas stutzeri DSM 10701

64.557

97.052

0.627
  pilC Legionella pneumophila strain ERS1305867

55.639

98.034

0.545
  pilC Vibrio cholerae strain A1552

43.627

100

0.437
  pilG Neisseria gonorrhoeae MS11

44.361

98.034

0.435
  pilG Neisseria meningitidis 44/76-A

44.11

98.034

0.432
  pilC Vibrio campbellii strain DS40M4

41.25

98.28

0.405