Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   I6I87_RS01660 Genome accession   NZ_CP068109
Coordinates   353350..355056 (+) Length   568 a.a.
NCBI ID   WP_201665470.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348350..360056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS01630 (I6I87_01630) nusA 349030..350511 (-) 1482 WP_007115082.1 transcription termination factor NusA -
  I6I87_RS01635 (I6I87_01635) rimP 350629..351138 (-) 510 WP_201665466.1 ribosome maturation factor RimP -
  I6I87_RS01650 (I6I87_01650) secG 351704..352024 (-) 321 WP_036594931.1 preprotein translocase subunit SecG -
  I6I87_RS01655 (I6I87_01655) tpiA 352116..352925 (-) 810 WP_201665468.1 triose-phosphate isomerase -
  I6I87_RS01660 (I6I87_01660) pilB 353350..355056 (+) 1707 WP_201665470.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6I87_RS01665 (I6I87_01665) pilC 355113..356336 (+) 1224 WP_201665472.1 type II secretion system F family protein Machinery gene
  I6I87_RS01670 (I6I87_01670) pilD 356342..357217 (+) 876 WP_201665474.1 prepilin peptidase Machinery gene
  I6I87_RS01675 (I6I87_01675) coaE 357214..357870 (+) 657 WP_227715556.1 dephospho-CoA kinase -
  I6I87_RS01680 (I6I87_01680) - 357928..359334 (-) 1407 WP_201665476.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 62604.05 Da        Isoelectric Point: 5.2322

>NTDB_id=527158 I6I87_RS01660 WP_201665470.1 353350..355056(+) (pilB) [Moraxella osloensis strain FDAARGOS_1130]
MAASLPGFGGIASRLVHEGLISEAAMQKVLAESQQQKINLIAYVVDNKLAQADAVAWVISREFGDPLIDLDAINVNYIPK
EAVDEKIIREFNILPIFQRGSRLFVAMSDPTRVDALDALRFGTRFTVETVVAEHHKIKSLIEKIFTTTNLADFDDMEAVE
FDETRADDDSSATSHLDVNDEAPVVKFVNGMLIKAITMGASDLHFEPYEKSYRVRFRIDGVLQKMANPPTQLAGKIAARL
KVMSQMDISERRVPQDGRIKLKISKDKAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPDQKQLFMDALAKPQG
MLLITGPTGSGKTVSLYTGLNILNTVETNISTAEDPVEINLEGINQVNVNNKVGLTFASALKSFLRQDPDIVMVGEIRDL
ETAEIAVKAAQTGHMVLSTLHTNSAPETLTRLRNMGVASFNIATSVNLVIAQRLARRLCKSCKKPTDVPKNSLLEMGFTE
EDLADPSNVIYEPVGCAECRDGYKGRVGIYEVMKVTPEIARIIMEDGNAIEIKDAALKQGFRDLRRSGILKVLQGTTSIQ
EMYRVTSE

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=527158 I6I87_RS01660 WP_201665470.1 353350..355056(+) (pilB) [Moraxella osloensis strain FDAARGOS_1130]
ATGGCGGCATCCCTTCCTGGTTTTGGTGGCATTGCATCGCGATTAGTGCATGAAGGACTAATTAGCGAAGCAGCAATGCA
AAAAGTATTGGCAGAATCGCAGCAGCAAAAAATAAATTTAATCGCCTATGTGGTTGATAATAAGCTTGCGCAAGCTGACG
CAGTAGCGTGGGTAATTTCGCGAGAATTTGGCGATCCCCTCATTGATTTGGATGCCATCAATGTCAACTATATTCCAAAA
GAAGCGGTTGATGAAAAAATTATTCGCGAATTTAATATTCTGCCGATTTTTCAACGAGGTAGTCGCTTATTTGTTGCCAT
GAGTGACCCGACGCGGGTAGATGCTTTAGACGCGCTGCGATTTGGTACAAGATTTACTGTAGAAACAGTGGTCGCCGAGC
ACCACAAAATCAAATCACTCATCGAAAAAATCTTTACTACCACCAATTTAGCTGATTTTGATGATATGGAAGCGGTGGAG
TTTGATGAAACCCGCGCCGATGACGACAGTAGTGCCACCAGTCATTTAGATGTCAATGATGAAGCGCCTGTCGTCAAGTT
CGTTAATGGGATGCTCATCAAAGCCATTACCATGGGCGCCTCAGACTTACACTTTGAACCCTATGAAAAATCTTATCGCG
TGCGTTTTCGTATTGATGGGGTGTTACAAAAAATGGCAAATCCACCGACGCAGCTAGCGGGTAAAATTGCTGCCCGCCTG
AAAGTCATGTCACAAATGGACATCTCTGAACGCCGCGTGCCGCAAGATGGTCGTATCAAATTAAAAATTTCCAAGGATAA
GGCGATTGATTTTCGTGTCAACTCATTGCCAACCTTATTTGGTGAAAAAATCGTACTGCGTATTTTAGACCCATCATCAG
CGATGCTAGGCATTGATGCACTCGGCTATGAGCCGGACCAAAAGCAGCTATTTATGGATGCGCTGGCAAAACCGCAAGGG
ATGTTATTGATTACCGGCCCTACTGGTTCGGGTAAAACCGTCTCCTTGTACACCGGTCTTAATATCTTAAACACAGTTGA
GACCAATATATCCACCGCAGAAGATCCGGTTGAGATTAACCTTGAAGGCATTAATCAGGTCAACGTGAACAATAAAGTTG
GCTTGACCTTTGCCAGTGCGCTCAAATCATTCTTGCGTCAAGACCCTGATATTGTGATGGTCGGTGAGATTCGTGACTTG
GAAACGGCGGAAATTGCTGTCAAAGCTGCCCAAACAGGGCATATGGTGCTGTCAACCTTGCATACCAACTCAGCGCCAGA
AACCTTAACGCGTCTGCGGAATATGGGTGTGGCATCTTTTAACATTGCCACCTCAGTCAATTTGGTAATCGCACAGCGCT
TAGCACGTCGCCTATGTAAATCCTGCAAAAAACCGACAGATGTACCAAAAAATAGCTTGCTTGAAATGGGCTTTACGGAA
GAAGATTTGGCAGATCCCAGCAATGTCATTTATGAGCCCGTTGGCTGCGCTGAATGCCGCGATGGCTATAAAGGACGTGT
TGGTATTTATGAAGTCATGAAAGTAACACCAGAGATTGCCCGAATTATTATGGAAGATGGCAACGCTATTGAGATTAAAG
ACGCTGCTTTAAAGCAAGGGTTTAGGGATTTAAGGCGCTCAGGTATTTTAAAGGTTCTACAAGGCACGACCAGTATCCAA
GAGATGTATCGTGTTACTAGCGAATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(15-145)

Type II/IV secretion system protein (T2SSE)

(191-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

68.021

99.648

0.678
  pilB Acinetobacter baylyi ADP1

65.603

99.296

0.651
  pilB Legionella pneumophila strain ERS1305867

51.767

99.648

0.516
  pilF Neisseria gonorrhoeae MS11

49.195

98.415

0.484
  pilB Vibrio cholerae strain A1552

49.186

97.359

0.479
  pilB Vibrio parahaemolyticus RIMD 2210633

47.048

98.415

0.463
  pilB Vibrio campbellii strain DS40M4

46.607

98.592

0.46
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.927

91.197

0.373
  pilF Thermus thermophilus HB27

36.649

100

0.37