Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6I87_RS01670 Genome accession   NZ_CP068109
Coordinates   356342..357217 (+) Length   291 a.a.
NCBI ID   WP_201665474.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351342..362217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS01650 (I6I87_01650) secG 351704..352024 (-) 321 WP_036594931.1 preprotein translocase subunit SecG -
  I6I87_RS01655 (I6I87_01655) tpiA 352116..352925 (-) 810 WP_201665468.1 triose-phosphate isomerase -
  I6I87_RS01660 (I6I87_01660) pilB 353350..355056 (+) 1707 WP_201665470.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6I87_RS01665 (I6I87_01665) pilC 355113..356336 (+) 1224 WP_201665472.1 type II secretion system F family protein Machinery gene
  I6I87_RS01670 (I6I87_01670) pilD 356342..357217 (+) 876 WP_201665474.1 prepilin peptidase Machinery gene
  I6I87_RS01675 (I6I87_01675) coaE 357214..357870 (+) 657 WP_227715556.1 dephospho-CoA kinase -
  I6I87_RS01680 (I6I87_01680) - 357928..359334 (-) 1407 WP_201665476.1 nicotinate phosphoribosyltransferase -
  I6I87_RS01685 (I6I87_01685) - 359404..360507 (-) 1104 WP_201665478.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  I6I87_RS01690 (I6I87_01690) nfuA 360792..361409 (+) 618 WP_096489426.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32101.45 Da        Isoelectric Point: 7.6439

>NTDB_id=527160 I6I87_RS01670 WP_201665474.1 356342..357217(+) (pilD) [Moraxella osloensis strain FDAARGOS_1130]
MALILDFVSLLQQSQWLTLLIVSILGLCVGSFLNVVIYRTPLMMEQQWKNECQLLLHPETVIDNHESITLSSPASRCPHC
GHSIRWFENMPVISWLLLKGKCSECHNAISYRYPLVEIITAILSVLVVMKFGVTWQALAGLALTWTLVALTGIDFDTQLL
PDRFTLPLAGLGLFVNAFGLFVSPTAAIFGYVFGFLCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLGPLMLPLIVLL
SAFVGSVVGVILMKRSGESKPFAFGPYIAIAGMIALLYGQSIMSWYLGKMS

Nucleotide


Download         Length: 876 bp        

>NTDB_id=527160 I6I87_RS01670 WP_201665474.1 356342..357217(+) (pilD) [Moraxella osloensis strain FDAARGOS_1130]
ATGGCATTGATTTTAGATTTTGTATCGTTATTACAGCAGTCGCAATGGCTTACTTTGCTCATCGTATCAATCTTGGGCTT
GTGTGTGGGTAGTTTTTTAAATGTGGTGATTTATCGCACGCCTTTGATGATGGAGCAGCAGTGGAAGAACGAATGCCAGC
TATTGCTCCATCCAGAAACCGTTATTGACAATCATGAATCCATTACCTTAAGCAGTCCTGCTTCTCGTTGCCCGCATTGT
GGGCATTCAATACGTTGGTTTGAAAATATGCCTGTTATTAGCTGGCTGCTGCTAAAAGGAAAATGTAGTGAGTGTCATAA
CGCCATTAGTTATCGTTATCCGCTTGTAGAAATCATCACCGCTATTTTGTCTGTGCTGGTGGTGATGAAATTTGGTGTTA
CTTGGCAAGCGCTGGCAGGATTAGCACTCACATGGACATTAGTCGCTTTAACAGGCATTGATTTTGATACCCAATTGTTG
CCTGACCGATTTACATTGCCATTAGCGGGATTAGGATTATTCGTCAATGCCTTTGGCTTGTTTGTCAGTCCCACAGCGGC
TATTTTTGGCTATGTATTTGGGTTTTTATGCCTGTGGATTGTCTATCAACTGTTTTTGCTGATTACGGGCAAGCACGGGA
TGGGGCATGGCGATTTTAAATTATTAGCGGCTTTGGGGGCTTGGCTAGGGCCTTTGATGCTACCATTAATTGTGCTTTTA
TCTGCGTTTGTCGGATCGGTTGTGGGTGTGATATTGATGAAGCGATCTGGCGAGAGCAAACCTTTTGCATTTGGACCCTA
TATCGCGATTGCCGGCATGATAGCACTTTTGTATGGGCAATCAATAATGTCGTGGTATCTAGGTAAAATGTCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-131)

Type IV leader peptidase family (Peptidase_A24)

(142-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

61.837

97.251

0.601
  pilD Acinetobacter nosocomialis M2

61.837

97.251

0.601
  pilD Vibrio campbellii strain DS40M4

48.41

97.251

0.471
  pilD Vibrio cholerae strain A1552

48.54

94.158

0.457
  pilD Neisseria gonorrhoeae MS11

44.815

92.784

0.416