Detailed information NTG0526447

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: JJQ97_RS04560
• Genome accession: NZ_CP068034
• Coordinates: 1041302..1042519 (-)
• Length: 405 a.a.
• NCBI ID: WP_201419315.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain BIM B-268
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1036302..1047519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJQ97_RS04530 (JJQ97_04175)	-	1037729..1038262 (-)	534	WP_046269799.1	MOSC domain-containing protein	-
JJQ97_RS04535 (JJQ97_04180)	-	1038259..1038888 (-)	630	WP_003406555.1	DUF1780 domain-containing protein	-
JJQ97_RS04540 (JJQ97_04185)	-	1039014..1039475 (+)	462	WP_181004423.1	hypothetical protein	-
JJQ97_RS04545 (JJQ97_04190)	yacG	1039602..1039811 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
JJQ97_RS04550 (JJQ97_04195)	coaE	1039808..1040431 (-)	624	WP_201419313.1	dephospho-CoA kinase	-
JJQ97_RS04555 (JJQ97_04200)	pilD	1040428..1041300 (-)	873	WP_201419314.1	A24 family peptidase	Machinery gene
JJQ97_RS04560 (JJQ97_04205)	pilC	1041302..1042519 (-)	1218	WP_201419315.1	type II secretion system F family protein	Machinery gene
JJQ97_RS04565 (JJQ97_04210)	pilB	1042522..1044216 (-)	1695	WP_201419316.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JJQ97_RS04570 (JJQ97_04215)	-	1044442..1044846 (+)	405	WP_032613640.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JJQ97_RS04575 (JJQ97_04220)	-	1045115..1045486 (-)	372	WP_201419317.1	helix-turn-helix domain-containing protein	-
JJQ97_RS04580 (JJQ97_04225)	gstA	1045641..1046261 (+)	621	WP_201419318.1	glutathione transferase GstA	-
JJQ97_RS04585 (JJQ97_04230)	-	1046358..1046903 (-)	546	WP_004415097.1	DUF1523 family protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44208.19 Da
• Isoelectric Point: 10.1956

>NTDB_id=526447 JJQ97_RS04560 WP_201419315.1 1041302..1042519(-) (pilC) [Pseudomonas syringae strain BIM B-268]
MASKAVKVIVYTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSASFFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQTVFASFGAQLPAFTLMVIGLSDVVQKWWLAILGLFFVSFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVIKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=526447 JJQ97_RS04560 WP_201419315.1 1041302..1042519(-) (pilC) [Pseudomonas syringae strain BIM B-268]
ATGGCCAGCAAGGCAGTCAAAGTCATCGTTTACACTTGGGAAGGTGTTGACAAGAAAGGCACTAAAACCAGTGGCGAACT
GAGCGGCCATAATCTGGCGCTCGTAAAGGCCCAGTTACGCAAGCAAGGCATCAATCCTACCAAGGTGCGTAAGAAGTCTG
CGTCGTTCTTCGGCAAAGGCAAAAAAATCAAGCCATTGGACATCGCTTTTTTTTCTCGGCAGATGGCAACGATGATGAAG
GCTGGTGTGCCCCTGCTTCAATCATTCGACATCATCAGTGAGGGCGCTGAAAATCCAAATATGCGTGCGTTGGTAGGATC
GCTAAAGCAAGAGGTTTCCGCAGGTAACAGCTTCGCAACGGCGCTGAGACAAAAACCAGAATATTTCGATGACCTGTTTT
GCAATCTGGTCGATGCTGGCGAGCAAGCTGGCGCACTTGAAAGCCTGCTGGATCGCGTTGCTAGTTACAAGGAAAAAACT
GAAAAGCTAAAAGCTAAAATCAAAAAAGCCATGACATACCCTATTGCTGTGTTGATCGTAGCAATTATTGTGTCAGGAAT
TTTGCTCATCAAGGTAGTGCCACAGTTCCAGACGGTCTTCGCTAGCTTCGGCGCTCAGCTACCTGCATTTACTTTGATGG
TGATTGGTCTATCGGACGTCGTGCAAAAATGGTGGCTGGCGATTCTAGGACTATTTTTCGTTAGCTTTTTTATGTTCAAA
CGTGCTTACAAACAGTCCCAAAAGTTTCGAGACAGTCTCGACCGCTTTCTTCTGAAAGTGCCCATCATCGGGCCGTTGAT
TTTCAAATCTTCGGTGGCACGCTACGCGCGCACTCTTGCAACAACGTTTGCCGCTGGCGTCCCGCTTGTTGAGGCTTTGG
ACTCAGTCGCCGGAGCGACTGGCAATGTAGTATTTAAAAATGCAGTCATCAAGGTAAAACAGGACGTCTCCACAGGCATG
CAACTGAATTTCTCGATGCGTTCAACAGGAGTATTTCCGAGCCTGGCGATTCAGATGACAGCCATTGGCGAAGAATCCGG
CGCCTTGGACACCATGCTCGACAAGGTAGCTACCTATTACGAGGACGAAGTCGATAACATGGTCGACAATCTGACCAGCC
TTATGGAACCGATGATCATGGCCTTTTTGGGCGTGATAGTTGGCGGGCTGGTAATTGCGATGTATCTACCTATCTTCCAA
CTCGGAAACGTCGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	74.321	100	0.743
pilC	Acinetobacter baylyi ADP1	59.804	100	0.602
pilC	Acinetobacter baumannii D1279779	59.653	99.753	0.595
pilC	Legionella pneumophila strain ERS1305867	50.739	100	0.509
pilC	Vibrio campbellii strain DS40M4	43.577	98.025	0.427
pilG	Neisseria gonorrhoeae MS11	43.467	98.272	0.427
pilG	Neisseria meningitidis 44/76-A	43.467	98.272	0.427
pilC	Vibrio cholerae strain A1552	40.988	100	0.41
pilC	Thermus thermophilus HB27	38.404	99.012	0.38