Detailed information NTG0526446

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JJQ97_RS04555
• Genome accession: NZ_CP068034
• Coordinates: 1040428..1041300 (-)
• Length: 290 a.a.
• NCBI ID: WP_201419314.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain BIM B-268
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1035428..1046300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJQ97_RS04525 (JJQ97_04170)	-	1036214..1037512 (-)	1299	WP_003430739.1	NAD(P)/FAD-dependent oxidoreductase	-
JJQ97_RS04530 (JJQ97_04175)	-	1037729..1038262 (-)	534	WP_046269799.1	MOSC domain-containing protein	-
JJQ97_RS04535 (JJQ97_04180)	-	1038259..1038888 (-)	630	WP_003406555.1	DUF1780 domain-containing protein	-
JJQ97_RS04540 (JJQ97_04185)	-	1039014..1039475 (+)	462	WP_181004423.1	hypothetical protein	-
JJQ97_RS04545 (JJQ97_04190)	yacG	1039602..1039811 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
JJQ97_RS04550 (JJQ97_04195)	coaE	1039808..1040431 (-)	624	WP_201419313.1	dephospho-CoA kinase	-
JJQ97_RS04555 (JJQ97_04200)	pilD	1040428..1041300 (-)	873	WP_201419314.1	A24 family peptidase	Machinery gene
JJQ97_RS04560 (JJQ97_04205)	pilC	1041302..1042519 (-)	1218	WP_201419315.1	type II secretion system F family protein	Machinery gene
JJQ97_RS04565 (JJQ97_04210)	pilB	1042522..1044216 (-)	1695	WP_201419316.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JJQ97_RS04570 (JJQ97_04215)	-	1044442..1044846 (+)	405	WP_032613640.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JJQ97_RS04575 (JJQ97_04220)	-	1045115..1045486 (-)	372	WP_201419317.1	helix-turn-helix domain-containing protein	-
JJQ97_RS04580 (JJQ97_04225)	gstA	1045641..1046261 (+)	621	WP_201419318.1	glutathione transferase GstA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32007.21 Da
• Isoelectric Point: 8.3734

>NTDB_id=526446 JJQ97_RS04555 WP_201419314.1 1040428..1041300(-) (pilD) [Pseudomonas syringae strain BIM B-268]
MPLLDLLASSPLAFVITCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=526446 JJQ97_RS04555 WP_201419314.1 1040428..1041300(-) (pilD) [Pseudomonas syringae strain BIM B-268]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCCTGGCCTTCGTCATCACCTGCTGCATACTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGGTCGTCTACCGCCTGCCAATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAGCCCGTCTTCAACCTGAATCGTCCCCGTTCCAGCTGCCCGCATTGCGCGCACAAAATCCGC
CCGTGGGAAAACCTGCCGGTGATCAGCTATCTGCTGCTGCGTGGTAAATGCTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGCGCAGTGCTATCAGCCTACGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCGGCGG
CGATGCTGGTACTGAGTTGGGGGCTGTTGGCGATGAGTCTGATCGATGCCGATCACCAACTGTTGCCTGATTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCTTTCGGGCTGTTCACCTCGCTGAACGATGCGCTGTGGGGTGCAGT
GGCCGGGTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTGGGCGCGTGGGGCGGCTGGCAGGTTTTGCCGTTGACCATCCTGTTATCGTCGCTGGTGGGT
GCGGTGCTCGGGGTGATCATGATGCGTGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	97.931	0.521
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	52.92	94.483	0.5
pilD	Acinetobacter nosocomialis M2	52.19	94.483	0.493
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476