Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JKJ11_RS15480 Genome accession   NZ_CP068024
Coordinates   3307102..3308784 (-) Length   560 a.a.
NCBI ID   WP_252039130.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3302102..3313784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS15460 (JKJ11_15455) - 3302776..3303600 (-) 825 WP_006074827.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  JKJ11_RS15465 (JKJ11_15460) - 3303724..3305175 (-) 1452 WP_252038456.1 AAA family ATPase -
  JKJ11_RS15470 (JKJ11_15465) aroB 3305269..3306354 (-) 1086 WP_252038458.1 3-dehydroquinate synthase -
  JKJ11_RS15475 (JKJ11_15470) aroK 3306383..3306907 (-) 525 WP_038231065.1 shikimate kinase AroK -
  JKJ11_RS15480 (JKJ11_15475) pilQ 3307102..3308784 (-) 1683 WP_252039130.1 type IV pilus secretin PilQ family protein Machinery gene
  JKJ11_RS15485 (JKJ11_15480) - 3308811..3309323 (-) 513 WP_252038465.1 pilus assembly protein PilP -
  JKJ11_RS15490 (JKJ11_15485) pilO 3309307..3309903 (-) 597 WP_252038467.1 type 4a pilus biogenesis protein PilO Machinery gene
  JKJ11_RS15495 (JKJ11_15490) - 3309910..3310503 (-) 594 WP_006071134.1 PilN domain-containing protein -
  JKJ11_RS15500 (JKJ11_15495) pilM 3310504..3311487 (-) 984 WP_252038469.1 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 60943.75 Da        Isoelectric Point: 4.5492

>NTDB_id=526347 JKJ11_RS15480 WP_252039130.1 3307102..3308784(-) (pilQ) [Vibrio sp. SCSIO 43133]
MLSTWRGTVYLWVLIISTDLIATPQTNQLVDVSFELDKQKRAVVVVELSHVGSVVDISAESQGIKIVVKQTQIASDKLAI
LDVTDFSTAVNQIELFDDSPDVRIFVETAMAVQYQYTMHGKQLKVTILPLSQQQSDEQKLFGSHSGKLTSINFQDIPVRS
VLQLLADYNHFNLVASDSVQGNLTLRLDGVPWTEVLDIILRVKGLDKRVKGNIIMVAPKTELDLQEKQALEKSRLAEQIG
QLKSEIININYAKAADVAAMIGGDSDVSMLSERGSVAIDERTNALLVRELPENLRVIKEIIASLDIPVKQVQIEARVVTI
KEGNIEELGIRWGYTSINGDTTIGSTIEGNLASSGIGGGEVDIDDFLNVNLGALSDNAASIAFQVASLGSNTLLDLELSA
LQSESKAEIISSPRLITTNKKSAYIEQGTEIPYLKSTSSGATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDRVGEVL
KTLEGETVAIDTQRIGTQVLVNDGETVVLGGIFQHAMTSKVDKVPVLGDIPGLGALFRRTYENIGKNELLIFVTPKIITQ

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=526347 JKJ11_RS15480 WP_252039130.1 3307102..3308784(-) (pilQ) [Vibrio sp. SCSIO 43133]
ATGTTGTCCACTTGGAGGGGGACTGTCTATTTGTGGGTGTTAATCATCAGTACTGATTTGATCGCCACGCCCCAAACTAA
TCAACTTGTTGATGTCTCATTTGAACTGGATAAACAGAAGCGCGCAGTAGTCGTTGTTGAGCTTTCTCATGTTGGCAGTG
TCGTAGATATTAGCGCAGAGTCGCAAGGAATAAAGATTGTGGTAAAGCAAACCCAAATAGCGTCAGACAAGCTGGCGATT
TTGGATGTCACGGATTTTTCTACCGCAGTGAATCAGATAGAACTATTTGATGATAGTCCCGATGTTCGGATCTTTGTCGA
GACCGCTATGGCAGTTCAATATCAATATACGATGCATGGTAAACAACTGAAAGTGACAATTTTACCTCTGTCTCAGCAAC
AAAGTGATGAACAAAAATTGTTTGGTAGTCATAGTGGCAAGCTCACTTCAATCAATTTCCAAGACATTCCTGTGCGCAGT
GTATTACAGCTTCTGGCTGACTATAACCACTTTAATTTAGTGGCATCCGATAGTGTCCAAGGCAACTTAACCTTGCGTTT
AGATGGCGTGCCATGGACGGAAGTCCTCGACATTATCCTGCGAGTAAAAGGGTTAGATAAACGGGTCAAGGGCAACATCA
TCATGGTGGCCCCTAAAACAGAGTTAGATTTACAAGAGAAGCAGGCGTTAGAAAAGAGTCGCTTGGCCGAGCAAATCGGT
CAACTAAAATCAGAAATCATTAATATTAACTATGCTAAAGCGGCGGATGTAGCGGCCATGATTGGTGGAGATAGTGATGT
CAGTATGTTATCTGAACGAGGTTCAGTTGCTATCGATGAGCGCACCAACGCCTTATTGGTGCGAGAACTGCCTGAAAATC
TTCGCGTGATTAAAGAGATTATTGCCTCACTCGATATACCCGTGAAACAGGTACAAATTGAAGCGCGAGTGGTCACTATC
AAAGAGGGTAATATTGAAGAGTTGGGGATACGGTGGGGTTATACATCGATAAATGGTGACACCACGATCGGCAGTACGAT
AGAAGGCAACCTTGCTTCCTCTGGCATCGGTGGGGGAGAAGTGGACATTGATGACTTCCTTAATGTTAACTTGGGGGCGC
TGTCTGACAATGCCGCCAGTATCGCATTTCAAGTAGCAAGCCTCGGCTCAAATACGTTACTTGATCTAGAGTTGTCCGCA
TTACAAAGTGAATCGAAAGCCGAAATCATATCCAGTCCACGTCTTATCACTACCAATAAAAAGTCTGCTTATATAGAGCA
GGGAACAGAAATTCCTTATTTGAAATCGACATCGAGTGGAGCGACAGCAGTTGAGTTCAAAAAAGCGGTGCTTTCCTTGA
CGGTGACTCCGCAGATCACGCCCGACAATCGACTTATTCTCGACTTAGATGTGACTCAAGACAGGGTTGGTGAAGTGCTG
AAAACCCTAGAGGGTGAAACTGTGGCGATTGATACTCAAAGGATAGGGACTCAAGTTCTGGTTAACGATGGCGAAACTGT
GGTGCTAGGCGGTATTTTTCAACATGCCATGACCAGCAAGGTAGATAAAGTGCCAGTTCTTGGTGATATTCCGGGGTTAG
GGGCATTATTTAGACGAACCTATGAAAACATCGGTAAGAATGAGTTACTGATCTTCGTAACTCCTAAGATTATTACTCAG
TAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(400-558)

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

64.171

100

0.643
  pilQ Vibrio cholerae strain A1552

64.171

100

0.643
  pilQ Vibrio campbellii strain DS40M4

65.688

97.321

0.639
  pilQ Legionella pneumophila strain ERS1305867

40.63

100

0.414
  pilQ Legionella pneumophila strain Lp02

40.455

100

0.412
  comQ Acinetobacter baylyi ADP1

39.184

100

0.395
  pilQ Acinetobacter baumannii D1279779

36.627

100

0.384
  pilQ Acinetobacter baumannii strain A118

36.627

100

0.384
  pilQ Pseudomonas aeruginosa PAK

37.3

100

0.375