Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   JKJ11_RS15490 Genome accession   NZ_CP068024
Coordinates   3309307..3309903 (-) Length   198 a.a.
NCBI ID   WP_252038467.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3304307..3314903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS15470 (JKJ11_15465) aroB 3305269..3306354 (-) 1086 WP_252038458.1 3-dehydroquinate synthase -
  JKJ11_RS15475 (JKJ11_15470) aroK 3306383..3306907 (-) 525 WP_038231065.1 shikimate kinase AroK -
  JKJ11_RS15480 (JKJ11_15475) pilQ 3307102..3308784 (-) 1683 WP_252039130.1 type IV pilus secretin PilQ family protein Machinery gene
  JKJ11_RS15485 (JKJ11_15480) - 3308811..3309323 (-) 513 WP_252038465.1 pilus assembly protein PilP -
  JKJ11_RS15490 (JKJ11_15485) pilO 3309307..3309903 (-) 597 WP_252038467.1 type 4a pilus biogenesis protein PilO Machinery gene
  JKJ11_RS15495 (JKJ11_15490) - 3309910..3310503 (-) 594 WP_006071134.1 PilN domain-containing protein -
  JKJ11_RS15500 (JKJ11_15495) pilM 3310504..3311487 (-) 984 WP_252038469.1 pilus assembly protein PilM -
  JKJ11_RS15505 (JKJ11_15500) - 3311634..3314285 (+) 2652 WP_252038471.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22982.07 Da        Isoelectric Point: 5.5936

>NTDB_id=526348 JKJ11_RS15490 WP_252038467.1 3309307..3309903(-) (pilO) [Vibrio sp. SCSIO 43133]
MLDFELDDIKDWPFNYQLVIGLLVFMSSSYAWFWFSTKSNSDELERAVQLEQQLKLELKTVVAQTANLPNKKQQLELVRS
RYQRLLHLLPVQQELATLLAGVNQEGLHNQLTFTRIDWGKRASEHFLYKLPINIELTGNYNDIGHFSQAIAQLSRMVLIE
DAEWQRVSQESSVLHFRVQAATYQLHEDFGEKGDAGKN

Nucleotide


Download         Length: 597 bp        

>NTDB_id=526348 JKJ11_RS15490 WP_252038467.1 3309307..3309903(-) (pilO) [Vibrio sp. SCSIO 43133]
GTGTTGGACTTTGAACTGGATGACATAAAAGATTGGCCATTTAACTACCAGCTTGTTATCGGCCTATTGGTTTTCATGTC
ATCGAGTTATGCATGGTTTTGGTTTTCAACAAAGTCTAATTCTGATGAGTTAGAACGAGCTGTGCAGTTGGAACAACAGT
TAAAACTAGAGCTAAAAACAGTAGTTGCGCAAACGGCGAACCTGCCTAATAAAAAGCAGCAACTTGAGCTGGTGAGAAGT
CGCTATCAACGGTTACTTCATTTATTACCAGTTCAACAAGAACTCGCGACACTACTTGCCGGTGTCAACCAAGAAGGGCT
GCACAACCAACTCACTTTCACTCGAATTGACTGGGGCAAGCGCGCTTCGGAGCACTTTCTCTATAAGCTGCCAATAAATA
TAGAACTCACTGGAAATTACAACGACATTGGTCACTTTAGTCAGGCCATTGCACAGTTATCTCGAATGGTGCTTATCGAA
GATGCTGAGTGGCAGCGAGTGAGTCAGGAAAGCAGTGTATTACATTTCCGAGTTCAAGCTGCAACCTATCAACTGCATGA
GGATTTTGGGGAGAAAGGCGATGCTGGTAAGAATTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(44-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

50.526

95.96

0.485
  pilO Vibrio campbellii strain DS40M4

51.648

91.919

0.475